| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ytfP [H]
Identifier: 146340129
GI number: 146340129
Start: 3342989
End: 3344215
Strand: Direct
Name: ytfP [H]
Synonym: BRADO3144
Alternate gene names: 146340129
Gene position: 3342989-3344215 (Clockwise)
Preceding gene: 146340128
Following gene: 146340133
Centisome position: 44.83
GC content: 67.48
Gene sequence:
>1227_bases ATGTCTTCTTCAAAGCATATTGCGGTTGTCGGGGCCGGCCCGGCCGGGCTGATGGCCGCCGAGGTGCTGGCCGCGGGCGG AGCCGACGTGACCGTCTACGACGCGATGCCGTCGGTGGCGCGCAAGTTCCTGATGGCGGGGCGAGGGGGCCTCAATCTCA CGCATAGCGAAGAGCTGGAGGCATTCCTGGCGCGTTATCGCGAAGCGGCGGACTGGCTTGCGCCCGCGGTCCAAGGCTTC GCGCCACAACAACTGCGCGACTGGTGCGAAGCGTTGGGCCAACCGACCTTCGTCGGCTCCTCGGGCCGCGTGTTTCCGGT CGCGATGAAAGCCTCGCCACTGCTCCGCGCCTGGCTGCGCCGGCTCGATGCGCACGGCGCGCGCACCGAGCTGCGCCATC GCTGGACCGGCTGGGACGATCAGGGTCGTCTCATCTTCGACACGCCAAACGGTCCGCGCGCCATCGCAGCCGAGGCGACG GTGCTCGCCCTCGGCGGCGCGAGCTGGCCGCGGCTCGGCTCCGATGGCGGCTGGGTATCGATCCTTGCAGCAAGAGGCGT CGCGATCGCGCCGCTGCGGCCCTCCAATTGTGGCTTCAGCGTCGGCTGGTCCGACATCTTTCGCGACCGGTTCGAGGGCC ATCCGCTGAAGGGTATCGCGCTGTCGTTTGGCGAGCGCAGTGTGCGCGGTGAGGCGGTCGTCACGCGAGATGGCATTGAA GGCGGCGCAGTCTACGCGCTGTCGGCTGAATTGCGCGAGGCCATCGCGCTGAATGGCGAGACGGTCTTGCATGTCGCGTT GCGGCCTGACCTCGAGACGCCCGATCTGATCAGGCGGCTGTCGGCACCGCGCGGAAAACAGTCGTTCTCGAACGTGCTGC GCAAGGTGCTGCAGCTCTCTCCTGTGGCGATCGGGCTATTGCAGGAGGCGGCAAAGACGCAAGGGCAGTCATTGTCTTCG CTGCCACCCGAGCGTCTCGCGGCGCTCGTTAACGACGTGCCAATCAAGCTGACGGGCATTGCGGGGCTCGCGCGCGCTAT CTCCAGCGCCGGCGGTATCGCGCACGACGAGCTCGATGCTGACTACATGCTCAGGCGTCTCCCAGGCGTGTTCGCCGCGG GAGAGATGCTGGACTGGGAGGCCCCGACCGGCGGCTATCTGCTGCAGGCCTCATTTGCGACGGGCGTGGCTGCGGGGAGG GGCGTGCTGAAGTGGCTCAAATCGTAG
Upstream 100 bases:
>100_bases CGGGCGTTCGCCGCGCCGAAGCGGCTTCGGCCGCGCAGGCGGATCAAGCCCGGGCATGACGCCCTTTGGTTTGGCAGGCC GCGCGGCTTAAACTGGCGAG
Downstream 100 bases:
>100_bases GGTGGGCAAAGCGCAGCGTGCACACCATCAGCGTCAACCGAGACCACGGTGGGCACGATGCGCCGCGGCTTTGCCGCGTC GTCTCTTTGCCCACCCTACA
Product: putative signal peptide
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MSSSKHIAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELEAFLARYREAADWLAPAVQGF APQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLRRLDAHGARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEAT VLALGGASWPRLGSDGGWVSILAARGVAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIE GGAVYALSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLSPVAIGLLQEAAKTQGQSLSS LPPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDADYMLRRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGR GVLKWLKS
Sequences:
>Translated_408_residues MSSSKHIAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELEAFLARYREAADWLAPAVQGF APQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLRRLDAHGARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEAT VLALGGASWPRLGSDGGWVSILAARGVAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIE GGAVYALSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLSPVAIGLLQEAAKTQGQSLSS LPPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDADYMLRRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGR GVLKWLKS >Mature_407_residues SSSKHIAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELEAFLARYREAADWLAPAVQGFA PQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLRRLDAHGARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEATV LALGGASWPRLGSDGGWVSILAARGVAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIEG GAVYALSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLSPVAIGLLQEAAKTQGQSLSSL PPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDADYMLRRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGRG VLKWLKS
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 43204; Mature: 43073
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSKHIAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELE CCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHH AFLARYREAADWLAPAVQGFAPQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCHHHHHHHH RLDAHGARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEATVLALGGASWPRLGSDGGWVS HHHCCCCHHHHHHCCCCCCCCCEEEEECCCCCCEEECCEEEEEECCCCCCCCCCCCCEEE ILAARGVAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIE EEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCC GGAVYALSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLS CCEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC PVAIGLLQEAAKTQGQSLSSLPPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHCCH DYMLRRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGRGVLKWLKS HHHHHHCCCCCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSSKHIAVVGAGPAGLMAAEVLAAGGADVTVYDAMPSVARKFLMAGRGGLNLTHSEELE CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHH AFLARYREAADWLAPAVQGFAPQQLRDWCEALGQPTFVGSSGRVFPVAMKASPLLRAWLR HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCCHHHHHHHH RLDAHGARTELRHRWTGWDDQGRLIFDTPNGPRAIAAEATVLALGGASWPRLGSDGGWVS HHHCCCCHHHHHHCCCCCCCCCEEEEECCCCCCEEECCEEEEEECCCCCCCCCCCCCEEE ILAARGVAIAPLRPSNCGFSVGWSDIFRDRFEGHPLKGIALSFGERSVRGEAVVTRDGIE EEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCC GGAVYALSAELREAIALNGETVLHVALRPDLETPDLIRRLSAPRGKQSFSNVLRKVLQLS CCEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC PVAIGLLQEAAKTQGQSLSSLPPERLAALVNDVPIKLTGIAGLARAISSAGGIAHDELDA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHCCH DYMLRRLPGVFAAGEMLDWEAPTGGYLLQASFATGVAAGRGVLKWLKS HHHHHHCCCCCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]