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The map label for this gene is yfdE [H]

Identifier: 146340110

GI number: 146340110

Start: 3320516

End: 3321721

Strand: Direct

Name: yfdE [H]

Synonym: BRADO3125

Alternate gene names: 146340110

Gene position: 3320516-3321721 (Clockwise)

Preceding gene: 146340108

Following gene: 146340111

Centisome position: 44.53

GC content: 67.25

Gene sequence:

>1206_bases
ATGGGACCGCTTGCGGGCATCAAGGTCATCGACATGACCACCGTGCTGATGGGGCCGTATGCCGCCCAGACGCTCGGCGA
CTACGGCGCCGACGTCATCAAGGTGGAATCGCCCGAAGGCGACGTCACCCGCAAGATCGGCCCGTGGCGCCATCCCGGCA
TGGGGCCGGTGACCCTCAACACCAACCGGAGCAAACGCGTCATCTGTCTCGATCTCAAGAAGCCGGCCGGGCGCGATGCG
GTGCTGCGCATGGCTGCGGATGCCGACGTGCTGCTCTACAACATCCGTCCGCAGGCGATGGCGCGGCTGAACCTCGGTTA
CGAGGTCGTCTCCGCGCTCAATCCGCGGCTGATCTATGCCGGCGTGTTCGGCTTCGGCCAGGACGGGCCCTATGCGGCGA
AGCCCGCCTATGACGACCTGATCCAGGGCGGGGCGGCGCTGTCACACCTGATGGCGGTCGCCGGCGACGGCACGCCGCGC
TATGTGCCGAACGCGCTGGTCGACCGCATCGTCGGGCTGACCGCCGTCGGCGCGATCTGCGCCAGCCTGGTGCATCGCGA
CCGCACCGGCCGCGGCCAGCGGCTGGATGTGCCGATGTTCGAGACCATGTCGGCCTTCATCATGGGCGACCACATGGGCG
GCCTCACCTACGAGCCGCCGCTCGACCGCGGCGGCTACGCCCGGCATCTGTCGCAGGACCGCCGGCCGTACAAGACCGCC
GATGGCCACATCTGCGTCATCGTCTACAACGACAAGCAATGGGACGCATTCTTCGCCGCATCCGGCCGCACCGACCTGCG
CGCCGACGACCGCTTCAACAGCTTCGCTCGTCGCGCCGCCAACATCGACGTCGTCTATGCCGAACTGGCGCGAATCTTCG
CCACGCGCACCACCGCGGAATGGACCGCGCTGCTCGACGAGGCCGACATCCCGGTCATGCCGATGCACGATCTCGAAAGC
CTGCTGCACGATCCGCACCTCGTCGCGACTGATTTCTTTCCCGTCGTAGAGCATCCGACCGAAGGCCCGATCCGCAGCAC
GCGGGTATCTGCGACCTGGTCAGAGACCAAGGCCGAGCCGCAGCATCTGGCGGGGCGGCCGAACGAGCATGGTCACGAGA
TCCTGCGCGAGCTCGGATTTTCGGCCGACGAGATCGCCGCGATGATCCGCGATGGCGCAACGATGCCGTCGCCTCCCAAG
GAGTGA

Upstream 100 bases:

>100_bases
CGGCCACGCGCATGGCTCCATACGCGCAGCGCCGCTTGCTCCAGAACCCTCGGTGCCGTTAGCTCTCCCCACAACAACGT
ACAAGGGAGCCAGCGCCGCG

Downstream 100 bases:

>100_bases
TCCAATGGATTTCGCGCTCTCCGCCAATCAGGAATCCATCCGCGATGCCGTCGCGAAAATCTGCGCGCGGTTCGACGACG
CCTATTGGCTGAAGAAGGAC

Product: putative Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGPLAGIKVIDMTTVLMGPYAAQTLGDYGADVIKVESPEGDVTRKIGPWRHPGMGPVTLNTNRSKRVICLDLKKPAGRDA
VLRMAADADVLLYNIRPQAMARLNLGYEVVSALNPRLIYAGVFGFGQDGPYAAKPAYDDLIQGGAALSHLMAVAGDGTPR
YVPNALVDRIVGLTAVGAICASLVHRDRTGRGQRLDVPMFETMSAFIMGDHMGGLTYEPPLDRGGYARHLSQDRRPYKTA
DGHICVIVYNDKQWDAFFAASGRTDLRADDRFNSFARRAANIDVVYAELARIFATRTTAEWTALLDEADIPVMPMHDLES
LLHDPHLVATDFFPVVEHPTEGPIRSTRVSATWSETKAEPQHLAGRPNEHGHEILRELGFSADEIAAMIRDGATMPSPPK
E

Sequences:

>Translated_401_residues
MGPLAGIKVIDMTTVLMGPYAAQTLGDYGADVIKVESPEGDVTRKIGPWRHPGMGPVTLNTNRSKRVICLDLKKPAGRDA
VLRMAADADVLLYNIRPQAMARLNLGYEVVSALNPRLIYAGVFGFGQDGPYAAKPAYDDLIQGGAALSHLMAVAGDGTPR
YVPNALVDRIVGLTAVGAICASLVHRDRTGRGQRLDVPMFETMSAFIMGDHMGGLTYEPPLDRGGYARHLSQDRRPYKTA
DGHICVIVYNDKQWDAFFAASGRTDLRADDRFNSFARRAANIDVVYAELARIFATRTTAEWTALLDEADIPVMPMHDLES
LLHDPHLVATDFFPVVEHPTEGPIRSTRVSATWSETKAEPQHLAGRPNEHGHEILRELGFSADEIAAMIRDGATMPSPPK
E
>Mature_400_residues
GPLAGIKVIDMTTVLMGPYAAQTLGDYGADVIKVESPEGDVTRKIGPWRHPGMGPVTLNTNRSKRVICLDLKKPAGRDAV
LRMAADADVLLYNIRPQAMARLNLGYEVVSALNPRLIYAGVFGFGQDGPYAAKPAYDDLIQGGAALSHLMAVAGDGTPRY
VPNALVDRIVGLTAVGAICASLVHRDRTGRGQRLDVPMFETMSAFIMGDHMGGLTYEPPLDRGGYARHLSQDRRPYKTAD
GHICVIVYNDKQWDAFFAASGRTDLRADDRFNSFARRAANIDVVYAELARIFATRTTAEWTALLDEADIPVMPMHDLESL
LHDPHLVATDFFPVVEHPTEGPIRSTRVSATWSETKAEPQHLAGRPNEHGHEILRELGFSADEIAAMIRDGATMPSPPKE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=30.9090909090909, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI300863124, Length=355, Percent_Identity=30.4225352112676, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=27.9373368146214, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=30.3482587064677, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=30.3482587064677, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI13376042, Length=355, Percent_Identity=27.3239436619718, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI266458393, Length=257, Percent_Identity=33.0739299610895, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=32.8125, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=36.4963503649635, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=36.4963503649635, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=342, Percent_Identity=33.6257309941521, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=29.5774647887324, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=26.9607843137255, Blast_Score=101, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24648431, Length=393, Percent_Identity=31.5521628498728, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24585488, Length=359, Percent_Identity=28.6908077994429, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43781; Mature: 43650

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPLAGIKVIDMTTVLMGPYAAQTLGDYGADVIKVESPEGDVTRKIGPWRHPGMGPVTLN
CCCCCCEEEEEHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCHHCCCCCCCCCCCEEEEC
TNRSKRVICLDLKKPAGRDAVLRMAADADVLLYNIRPQAMARLNLGYEVVSALNPRLIYA
CCCCCEEEEEECCCCCCCHHHEEEECCCCEEEEECCHHHHHHHHCCHHHHHHCCCEEEEE
GVFGFGQDGPYAAKPAYDDLIQGGAALSHLMAVAGDGTPRYVPNALVDRIVGLTAVGAIC
EECCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASLVHRDRTGRGQRLDVPMFETMSAFIMGDHMGGLTYEPPLDRGGYARHLSQDRRPYKTA
HHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
DGHICVIVYNDKQWDAFFAASGRTDLRADDRFNSFARRAANIDVVYAELARIFATRTTAE
CCEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
WTALLDEADIPVMPMHDLESLLHDPHLVATDFFPVVEHPTEGPIRSTRVSATWSETKAEP
HHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCCEEEEEHHHHCCCH
QHLAGRPNEHGHEILRELGFSADEIAAMIRDGATMPSPPKE
HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GPLAGIKVIDMTTVLMGPYAAQTLGDYGADVIKVESPEGDVTRKIGPWRHPGMGPVTLN
CCCCCEEEEEHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCHHCCCCCCCCCCCEEEEC
TNRSKRVICLDLKKPAGRDAVLRMAADADVLLYNIRPQAMARLNLGYEVVSALNPRLIYA
CCCCCEEEEEECCCCCCCHHHEEEECCCCEEEEECCHHHHHHHHCCHHHHHHCCCEEEEE
GVFGFGQDGPYAAKPAYDDLIQGGAALSHLMAVAGDGTPRYVPNALVDRIVGLTAVGAIC
EECCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ASLVHRDRTGRGQRLDVPMFETMSAFIMGDHMGGLTYEPPLDRGGYARHLSQDRRPYKTA
HHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
DGHICVIVYNDKQWDAFFAASGRTDLRADDRFNSFARRAANIDVVYAELARIFATRTTAE
CCEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
WTALLDEADIPVMPMHDLESLLHDPHLVATDFFPVVEHPTEGPIRSTRVSATWSETKAEP
HHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCCEEEEEHHHHCCCH
QHLAGRPNEHGHEILRELGFSADEIAAMIRDGATMPSPPKE
HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]