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The map label for this gene is yliC [C]

Identifier: 146340014

GI number: 146340014

Start: 3218689

End: 3219630

Strand: Direct

Name: yliC [C]

Synonym: BRADO3020

Alternate gene names: 146340014

Gene position: 3218689-3219630 (Clockwise)

Preceding gene: 146340013

Following gene: 146340015

Centisome position: 43.17

GC content: 64.65

Gene sequence:

>942_bases
ATGCTCAGCTATGCGCTCCGACGCGTGCTGTCGACCTTGCCCGTGATGGCGATCGTCGCGCTGTTCGTCTTCAGCCTGCT
GTACATCGCGCCGGGCGATCCGGCCGTTGTCATCGCGGGCGACCAGGCGAGCCCGGCCGACGTCGAGCGCATCCGCGCCA
ATCTCGGACTGGACCAGCCCTTCCTGGTCCAGTTCGGCAGCTGGGTGTGGCGCCTGCTGCACTTCGACCTGGGCACATCG
ATCTTCACCAATCTTCCGGTGTCGGCGATGATCGCCCAGCGCATCGAGCCGACCTTGTCGCTGATGATGGTGACGTTGGT
CCTCACCATCCTCATCGCGGTGCCGCTTGGCGTCATCGCGGCGTGGAAGGCGGGCACCTGGATCGATCGCGTGATCATGG
CCTTCGCCGTGTTCGGCTTCTCGGTGCCGGTGTTCGTGGTCGGCTACATCCTCGCCTACGTGTTCGCGCTGAAGTTCGAC
CTGTTGCCGGTGCAGGGCTATACGCCGCTCGCGCAAGGGTTCTGGCCGTGGCTGCAGAACCTCATTCTGCCGGCGGTGGC
GCTCGGCTGCGTCTACATCGCGCTGATCGCGCGCATCACCCGCGCCGCGATGCTCGAGGTGCTGCAGCAGGACTTCATCC
GCACCGCGCGCGCCAAAGGCCTCGGGCAGGGCGGCATCCTGTTCATCCATGCGCTGAAGAACGCTGCGGTGCCGATCGTC
ACCGTGGTCGGCATCGGCATCGCGCTCCTGATCGGCGGCGCCGTGGTCACCGAGAGCGTGTTCGCGATTCCCGGCTTGGG
ACGGCTCACCATCGATGCGATCCTGCGCCGAGACTATCCTGTCATTCAGGGCATCGTGCTGCTGTTCAGCTTCGTCTACG
TGCTTGTCAATCTCCTGATCGACATCACCTACACCCTGGTCGACCCGAGGATCCGCTATTGA

Upstream 100 bases:

>100_bases
TCGGCTACACGGCGTGGCGCAAGAACGTCTCCGGCGTGACCAAGGGGCCGATCCCGCTGTTCTGGGGCGTGTCGAAGACG
GCATGAGGCGCTGACAACTC

Downstream 100 bases:

>100_bases
CCGTCACGACCACAACGTCTCCGCCACCCGGCCTCGTCGTCGCGCCCCGTCTGCCGGACCTGATGGCGGCGCCGAAGGTC
CGGCGAGGCATCATCGGCTT

Product: putative oligopeptide/dipeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLSYALRRVLSTLPVMAIVALFVFSLLYIAPGDPAVVIAGDQASPADVERIRANLGLDQPFLVQFGSWVWRLLHFDLGTS
IFTNLPVSAMIAQRIEPTLSLMMVTLVLTILIAVPLGVIAAWKAGTWIDRVIMAFAVFGFSVPVFVVGYILAYVFALKFD
LLPVQGYTPLAQGFWPWLQNLILPAVALGCVYIALIARITRAAMLEVLQQDFIRTARAKGLGQGGILFIHALKNAAVPIV
TVVGIGIALLIGGAVVTESVFAIPGLGRLTIDAILRRDYPVIQGIVLLFSFVYVLVNLLIDITYTLVDPRIRY

Sequences:

>Translated_313_residues
MLSYALRRVLSTLPVMAIVALFVFSLLYIAPGDPAVVIAGDQASPADVERIRANLGLDQPFLVQFGSWVWRLLHFDLGTS
IFTNLPVSAMIAQRIEPTLSLMMVTLVLTILIAVPLGVIAAWKAGTWIDRVIMAFAVFGFSVPVFVVGYILAYVFALKFD
LLPVQGYTPLAQGFWPWLQNLILPAVALGCVYIALIARITRAAMLEVLQQDFIRTARAKGLGQGGILFIHALKNAAVPIV
TVVGIGIALLIGGAVVTESVFAIPGLGRLTIDAILRRDYPVIQGIVLLFSFVYVLVNLLIDITYTLVDPRIRY
>Mature_313_residues
MLSYALRRVLSTLPVMAIVALFVFSLLYIAPGDPAVVIAGDQASPADVERIRANLGLDQPFLVQFGSWVWRLLHFDLGTS
IFTNLPVSAMIAQRIEPTLSLMMVTLVLTILIAVPLGVIAAWKAGTWIDRVIMAFAVFGFSVPVFVVGYILAYVFALKFD
LLPVQGYTPLAQGFWPWLQNLILPAVALGCVYIALIARITRAAMLEVLQQDFIRTARAKGLGQGGILFIHALKNAAVPIV
TVVGIGIALLIGGAVVTESVFAIPGLGRLTIDAILRRDYPVIQGIVLLFSFVYVLVNLLIDITYTLVDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=40.8945686900958, Blast_Score=248, Evalue=4e-67,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=38.5756676557863, Blast_Score=243, Evalue=8e-66,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=38.0952380952381, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=36.1904761904762, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=40.4907975460123, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=29.1228070175439, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=29.4339622641509, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34121; Mature: 34121

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYALRRVLSTLPVMAIVALFVFSLLYIAPGDPAVVIAGDQASPADVERIRANLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCH
FLVQFGSWVWRLLHFDLGTSIFTNLPVSAMIAQRIEPTLSLMMVTLVLTILIAVPLGVIA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWKAGTWIDRVIMAFAVFGFSVPVFVVGYILAYVFALKFDLLPVQGYTPLAQGFWPWLQN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LILPAVALGCVYIALIARITRAAMLEVLQQDFIRTARAKGLGQGGILFIHALKNAAVPIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHCCCHHHH
TVVGIGIALLIGGAVVTESVFAIPGLGRLTIDAILRRDYPVIQGIVLLFSFVYVLVNLLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DITYTLVDPRIRY
HHHHHHCCCCCCC
>Mature Secondary Structure
MLSYALRRVLSTLPVMAIVALFVFSLLYIAPGDPAVVIAGDQASPADVERIRANLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCH
FLVQFGSWVWRLLHFDLGTSIFTNLPVSAMIAQRIEPTLSLMMVTLVLTILIAVPLGVIA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWKAGTWIDRVIMAFAVFGFSVPVFVVGYILAYVFALKFDLLPVQGYTPLAQGFWPWLQN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LILPAVALGCVYIALIARITRAAMLEVLQQDFIRTARAKGLGQGGILFIHALKNAAVPIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHCCCHHHH
TVVGIGIALLIGGAVVTESVFAIPGLGRLTIDAILRRDYPVIQGIVLLFSFVYVLVNLLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DITYTLVDPRIRY
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]