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The map label for this gene is pocR [H]

Identifier: 146339694

GI number: 146339694

Start: 2890735

End: 2891703

Strand: Direct

Name: pocR [H]

Synonym: BRADO2690

Alternate gene names: 146339694

Gene position: 2890735-2891703 (Clockwise)

Preceding gene: 146339693

Following gene: 146339695

Centisome position: 38.77

GC content: 64.09

Gene sequence:

>969_bases
TTGATCGGCAGGAAAGGGCTGATGGTCGAAACCGAGATCTTTGGCAAGCGATTGAAGGCGGGCCTGCGGCTCGAACAGGC
CCCGACGCTCGTCACCCGTGCGTTCGCCGACAGTGTGCTTGAAGCCGCAGAATGCCGGTCCGACGATCCGCAAAAAGGCT
TGTCCCATCCGCTGCCGCTTGACGATGCCTACATGGTCAGCGTGAAGTTTCGCGACTATCCCGATTGCGAATGCTGGGAG
AATGGGCGAACCGTTGCAAAGAAGGACATCTTCGCCGGCGGCACCTATCTCTACGACATGAAGCGCGCGCCCTGCTACGT
CATCGACAAGCCGTTTCATTCGATCTTCTACCGTCTGTCGCGCGAGGTCATCGAGGGCACGGCGCGCGAGATGTTCAGCG
CGTCCGTCGGTGAATTGTCCTACGAGCCGGCGGTGGGCGTCGACGATCCGGTCATGCGGCATCTCAGCCATGCCATGAGC
GAGGCATTGGGACGACCTGATGAGGCCAACCGGCTGTTCGTCGATCATCTGTCGATGACGATCGTCGCCCATGTCGTGCG
GACATACGGCGGCTCCGGCGAACCGGCACCGCTGTTGCCGGGCGGGCTCGCCGCCTGGCAGGTGCGCCGTGCCTGCGATC
TGATCGAGGCCAGGCTCTCCGGCAGCATCCTGCTCCAGGACATCGCGTCGGAGTTCGATCTGTCGCCGAGCTACTTCGCA
CGAGCTTTCAAGAAGTCGGTCGGCGTGGCTCCGCATCAATGGCTGCTGCAGCGCCGGGTCGCGCGGGCGCGTGATCTGCT
TGTGCAGGGCGAGCTCAGTCTGGGGATGATCGCCCTGGAAGTCGGCTTCGCCGATCAGAGCCACTTCACCCGGACCTTCA
CGCGGCTGGTCGGGACCAGTCCGGACCGCTGGCGCCGGTCGAAGGGGCGTGCGGCGATCAGACGCGCTGCCGCGCAGGAC
GCTCACTGA

Upstream 100 bases:

>100_bases
TCGCGGCCGCGTCTTGAAGACTGCCAGTCGGTCGCTGACGATGTTGTGAGGGGGTGCGACAGAGAAGCCCTTTCTCGCCC
GGTCAGGGTACCATACAACC

Downstream 100 bases:

>100_bases
CACCTACGCCGGTTTTGGACAATTCGAGCCGGTCCGAGGCAAGAGCGGCAGCGCCGTCCAGGCAACACTACTGTCGTCGC
GCCCAATGTCGGGCGCCCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MIGRKGLMVETEIFGKRLKAGLRLEQAPTLVTRAFADSVLEAAECRSDDPQKGLSHPLPLDDAYMVSVKFRDYPDCECWE
NGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLSREVIEGTAREMFSASVGELSYEPAVGVDDPVMRHLSHAMS
EALGRPDEANRLFVDHLSMTIVAHVVRTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFA
RAFKKSVGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTSPDRWRRSKGRAAIRRAAAQD
AH

Sequences:

>Translated_322_residues
MIGRKGLMVETEIFGKRLKAGLRLEQAPTLVTRAFADSVLEAAECRSDDPQKGLSHPLPLDDAYMVSVKFRDYPDCECWE
NGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLSREVIEGTAREMFSASVGELSYEPAVGVDDPVMRHLSHAMS
EALGRPDEANRLFVDHLSMTIVAHVVRTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFA
RAFKKSVGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTSPDRWRRSKGRAAIRRAAAQD
AH
>Mature_322_residues
MIGRKGLMVETEIFGKRLKAGLRLEQAPTLVTRAFADSVLEAAECRSDDPQKGLSHPLPLDDAYMVSVKFRDYPDCECWE
NGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLSREVIEGTAREMFSASVGELSYEPAVGVDDPVMRHLSHAMS
EALGRPDEANRLFVDHLSMTIVAHVVRTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFA
RAFKKSVGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTSPDRWRRSKGRAAIRRAAAQD
AH

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35811; Mature: 35811

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRKGLMVETEIFGKRLKAGLRLEQAPTLVTRAFADSVLEAAECRSDDPQKGLSHPLPL
CCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
DDAYMVSVKFRDYPDCECWENGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLS
CCCEEEEEEECCCCCCCCCCCCCEEHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHH
REVIEGTAREMFSASVGELSYEPAVGVDDPVMRHLSHAMSEALGRPDEANRLFVDHLSMT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
IVAHVVRTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH
RAFKKSVGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCC
PDRWRRSKGRAAIRRAAAQDAH
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGRKGLMVETEIFGKRLKAGLRLEQAPTLVTRAFADSVLEAAECRSDDPQKGLSHPLPL
CCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
DDAYMVSVKFRDYPDCECWENGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLS
CCCEEEEEEECCCCCCCCCCCCCEEHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHH
REVIEGTAREMFSASVGELSYEPAVGVDDPVMRHLSHAMSEALGRPDEANRLFVDHLSMT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
IVAHVVRTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH
RAFKKSVGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCC
PDRWRRSKGRAAIRRAAAQDAH
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]