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The map label for this gene is yliD [C]

Identifier: 146339626

GI number: 146339626

Start: 2808182

End: 2808994

Strand: Direct

Name: yliD [C]

Synonym: BRADO2619

Alternate gene names: 146339626

Gene position: 2808182-2808994 (Clockwise)

Preceding gene: 146339625

Following gene: 146339627

Centisome position: 37.66

GC content: 68.76

Gene sequence:

>813_bases
ATGAGGATCAAAGCCAACACGGCGATCGGCGGCGTGCTCGTCGCACTGCTGGGCGGCTCGGCGCTGGCCGCTGTCGTCTG
GACGCCCTTCGATCCGCTGCGCGTCAATCTGCGCGCCCGGCTGCGGCCGCCGTCGGCGCAGCACTGGCTCGGCACCGATG
AGTTCGGCCGAGACGTGCTGAGCCGCATCATGGCCGGGGCTTCGACCAGCGTGCTCGTGGCCGTCGCCACGGTGTTGATC
GCGGTCACGGTGGGCGTGCTGGTCGGGAGCGTCAGCGGGTATTGGCGGGGCTGGACCGATCGGCTGATCATGGCGGTCAA
TGATGCGCTGCTGGCGTTCCCCGGCATCCTCCTGGCGCTCGGTGTGATGATGGTGATCGGTGCGAACAGTTTCGGCCTCG
TGCTCGCGCTGGCGCTCGCCTACATGCCTTCGGTGGTGCGCGTCGTGCGCGGCACCGTGCTGTCGCTGCGCGAGAAGGAG
TATATCGAGGCCTCGCGCGTGCTCGGCAATTCCGAGCTCTACTCGCTGTTGCGGCACGTGCTGCCCAACGCCGTCGCGCC
CGTGGCCGTGCTCGCCACCAGCATGTTCGGCTGGGTGCTTCTGGCGGAGAGCGCGTTGAGCTTTCTCGGTCTCGGGGTGC
CGCCGCCGGCACCGACCTGGGGCAACATGCTGGCGGCGAGCCGGCCCTATATGGAGAACGCCGCCTGGCTGAGCATCTCG
CCGGGCCTGTGCATCGCGCTGACCCTACTCGGCATCAACCTGCTCGGCGATTCCTTGCGTGACCGCCTCGACCCGCGGAT
GGCGCAGCGATGA

Upstream 100 bases:

>100_bases
TGGTGCAGGGCTGTCTGCTGTTCACGGCCCTGATCTATGTCGTCGTCAATCTGATCGTCGATCTCTGCTACCCATTGTTC
GATCCCCGGGTGGCCGTCGC

Downstream 100 bases:

>100_bases
CGGCGCCGTTGTTGCAGATCGAGGGGCTGGGCATCGCGAGCGCAGCCGGCACGCCGATCGTCGATGGCATCTCGTTGGAG
ATCGGACGCGGCGAGTTCTT

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRIKANTAIGGVLVALLGGSALAAVVWTPFDPLRVNLRARLRPPSAQHWLGTDEFGRDVLSRIMAGASTSVLVAVATVLI
AVTVGVLVGSVSGYWRGWTDRLIMAVNDALLAFPGILLALGVMMVIGANSFGLVLALALAYMPSVVRVVRGTVLSLREKE
YIEASRVLGNSELYSLLRHVLPNAVAPVAVLATSMFGWVLLAESALSFLGLGVPPPAPTWGNMLAASRPYMENAAWLSIS
PGLCIALTLLGINLLGDSLRDRLDPRMAQR

Sequences:

>Translated_270_residues
MRIKANTAIGGVLVALLGGSALAAVVWTPFDPLRVNLRARLRPPSAQHWLGTDEFGRDVLSRIMAGASTSVLVAVATVLI
AVTVGVLVGSVSGYWRGWTDRLIMAVNDALLAFPGILLALGVMMVIGANSFGLVLALALAYMPSVVRVVRGTVLSLREKE
YIEASRVLGNSELYSLLRHVLPNAVAPVAVLATSMFGWVLLAESALSFLGLGVPPPAPTWGNMLAASRPYMENAAWLSIS
PGLCIALTLLGINLLGDSLRDRLDPRMAQR
>Mature_270_residues
MRIKANTAIGGVLVALLGGSALAAVVWTPFDPLRVNLRARLRPPSAQHWLGTDEFGRDVLSRIMAGASTSVLVAVATVLI
AVTVGVLVGSVSGYWRGWTDRLIMAVNDALLAFPGILLALGVMMVIGANSFGLVLALALAYMPSVVRVVRGTVLSLREKE
YIEASRVLGNSELYSLLRHVLPNAVAPVAVLATSMFGWVLLAESALSFLGLGVPPPAPTWGNMLAASRPYMENAAWLSIS
PGLCIALTLLGINLLGDSLRDRLDPRMAQR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=224, Percent_Identity=45.0892857142857, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787760, Length=236, Percent_Identity=38.9830508474576, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=36.5145228215768, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789964, Length=247, Percent_Identity=40.8906882591093, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1787498, Length=219, Percent_Identity=39.2694063926941, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787549, Length=259, Percent_Identity=34.3629343629344, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=33.6283185840708, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28619; Mature: 28619

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKANTAIGGVLVALLGGSALAAVVWTPFDPLRVNLRARLRPPSAQHWLGTDEFGRDVL
CEECCCHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHEECCCCCCCCCCCCHHHHHHHH
SRIMAGASTSVLVAVATVLIAVTVGVLVGSVSGYWRGWTDRLIMAVNDALLAFPGILLAL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GVMMVIGANSFGLVLALALAYMPSVVRVVRGTVLSLREKEYIEASRVLGNSELYSLLRHV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LPNAVAPVAVLATSMFGWVLLAESALSFLGLGVPPPAPTWGNMLAASRPYMENAAWLSIS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEC
PGLCIALTLLGINLLGDSLRDRLDPRMAQR
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MRIKANTAIGGVLVALLGGSALAAVVWTPFDPLRVNLRARLRPPSAQHWLGTDEFGRDVL
CEECCCHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHEECCCCCCCCCCCCHHHHHHHH
SRIMAGASTSVLVAVATVLIAVTVGVLVGSVSGYWRGWTDRLIMAVNDALLAFPGILLAL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GVMMVIGANSFGLVLALALAYMPSVVRVVRGTVLSLREKEYIEASRVLGNSELYSLLRHV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LPNAVAPVAVLATSMFGWVLLAESALSFLGLGVPPPAPTWGNMLAASRPYMENAAWLSIS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEC
PGLCIALTLLGINLLGDSLRDRLDPRMAQR
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA