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The map label for this gene is rbsB [H]

Identifier: 146339381

GI number: 146339381

Start: 2518910

End: 2519845

Strand: Direct

Name: rbsB [H]

Synonym: BRADO2363

Alternate gene names: 146339381

Gene position: 2518910-2519845 (Clockwise)

Preceding gene: 146339380

Following gene: 146339382

Centisome position: 33.78

GC content: 65.17

Gene sequence:

>936_bases
ATGAAGAAGATCGTTCTTGCGGTCGCATCGCTCGCGCTCCTGATGGGCTCGGCGCAGGCCGAGACCAAGTACCGTTTTGC
CGTCGTGCCTAAGGCGATGAACAATCCGTTCTTCGACGTCGCGCGCGACGGCTGCATGAAGCGGGCCAAGGAGCTCGGCA
ATGTCGAGTGCATCTACAAGGGGCCGATCGAGCACGAGCCGGCCACCCAGGCGCAGATCATCCAGGACTTCATCACCCAG
AAGGTCGACGGCCTCGCGATCTCGGTCGCCGACGTCGCGGCGATGACCAAGTCGATCGACGCGGCGACCGCGGCCGGCAT
CCCCGTCATCACCTTCGACGCTGACGCCCCGGGCTCCAAGCGCCTCGCTTATATCGGCACCAACAACAAGGATTTCGGCC
TCGCGCTCGGCAAGCAGCTGCGCGAGCTGCGGCCTGACGGCGGCAAATACGCCATGGTGTCGGGCGGCCCGGGCGCCAAG
AACCTGGCCGAGCGCGTCGAGGGCGTGCGCGAGGCGCTCAAGGGCTCGAAGTGGACCGAAGTGGCGGGCTCGCCGACCTT
CTGCAACGACGATTCCGCACTCGCCGTGCAGCAGATGACTGACCTGCGCACCGCCACGCCGGACCTCGGCGCGATCGTCC
CGGTCGGCGGCTGGCCGATGTTCGCGCCCGAGGGCTACAAGGCGTTCGTCAACAAGAACAAGAAGGACATCGACGCCGGC
AAGCTCACGCTGGTGGTCGCCGATACGCTGAAGATGCAGCTCGAGTTGCTGCGCGACGGCTATTCCAACGCGCTGACCGG
CCAGCGTCCGTTCGAGATGGGCGAGAAGTCGATGGACGCGCTGCTGGCGATCAAGAAGGGCGAGAAGGTGCCGGAGGTGA
TCTACACCGGCCTCGACCTCGTCACCAAGGACAACGTCGCCAAGCTCTTGAACTAA

Upstream 100 bases:

>100_bases
GCTGTAGTCAAATGAGGATACTGGCCGGGATGAGACTGATCACGTCTATCCGCACCCGGCACAGACAATCATCATGGATA
GACGATGAGGAGGGAAACCC

Downstream 100 bases:

>100_bases
TACGGTTCCTCCCGGGGAAAACCTGGCGGTCCGGCACCCGGCTTCGGCCGGCGGCCGGGCCGCCCTTTTTGTGTGCCGCA
GACGCCTGCCGCATCGGGCG

Product: putative sugar (D-ribose) ABC transporter periplasmic binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKKIVLAVASLALLMGSAQAETKYRFAVVPKAMNNPFFDVARDGCMKRAKELGNVECIYKGPIEHEPATQAQIIQDFITQ
KVDGLAISVADVAAMTKSIDAATAAGIPVITFDADAPGSKRLAYIGTNNKDFGLALGKQLRELRPDGGKYAMVSGGPGAK
NLAERVEGVREALKGSKWTEVAGSPTFCNDDSALAVQQMTDLRTATPDLGAIVPVGGWPMFAPEGYKAFVNKNKKDIDAG
KLTLVVADTLKMQLELLRDGYSNALTGQRPFEMGEKSMDALLAIKKGEKVPEVIYTGLDLVTKDNVAKLLN

Sequences:

>Translated_311_residues
MKKIVLAVASLALLMGSAQAETKYRFAVVPKAMNNPFFDVARDGCMKRAKELGNVECIYKGPIEHEPATQAQIIQDFITQ
KVDGLAISVADVAAMTKSIDAATAAGIPVITFDADAPGSKRLAYIGTNNKDFGLALGKQLRELRPDGGKYAMVSGGPGAK
NLAERVEGVREALKGSKWTEVAGSPTFCNDDSALAVQQMTDLRTATPDLGAIVPVGGWPMFAPEGYKAFVNKNKKDIDAG
KLTLVVADTLKMQLELLRDGYSNALTGQRPFEMGEKSMDALLAIKKGEKVPEVIYTGLDLVTKDNVAKLLN
>Mature_311_residues
MKKIVLAVASLALLMGSAQAETKYRFAVVPKAMNNPFFDVARDGCMKRAKELGNVECIYKGPIEHEPATQAQIIQDFITQ
KVDGLAISVADVAAMTKSIDAATAAGIPVITFDADAPGSKRLAYIGTNNKDFGLALGKQLRELRPDGGKYAMVSGGPGAK
NLAERVEGVREALKGSKWTEVAGSPTFCNDDSALAVQQMTDLRTATPDLGAIVPVGGWPMFAPEGYKAFVNKNKKDIDAG
KLTLVVADTLKMQLELLRDGYSNALTGQRPFEMGEKSMDALLAIKKGEKVPEVIYTGLDLVTKDNVAKLLN

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=304, Percent_Identity=28.6184210526316, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787795, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33267; Mature: 33267

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVLAVASLALLMGSAQAETKYRFAVVPKAMNNPFFDVARDGCMKRAKELGNVECIYK
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEE
GPIEHEPATQAQIIQDFITQKVDGLAISVADVAAMTKSIDAATAAGIPVITFDADAPGSK
CCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
RLAYIGTNNKDFGLALGKQLRELRPDGGKYAMVSGGPGAKNLAERVEGVREALKGSKWTE
EEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
VAGSPTFCNDDSALAVQQMTDLRTATPDLGAIVPVGGWPMFAPEGYKAFVNKNKKDIDAG
CCCCCCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCC
KLTLVVADTLKMQLELLRDGYSNALTGQRPFEMGEKSMDALLAIKKGEKVPEVIYTGLDL
EEEEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
VTKDNVAKLLN
EEHHHHHHHCC
>Mature Secondary Structure
MKKIVLAVASLALLMGSAQAETKYRFAVVPKAMNNPFFDVARDGCMKRAKELGNVECIYK
CHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEE
GPIEHEPATQAQIIQDFITQKVDGLAISVADVAAMTKSIDAATAAGIPVITFDADAPGSK
CCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
RLAYIGTNNKDFGLALGKQLRELRPDGGKYAMVSGGPGAKNLAERVEGVREALKGSKWTE
EEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
VAGSPTFCNDDSALAVQQMTDLRTATPDLGAIVPVGGWPMFAPEGYKAFVNKNKKDIDAG
CCCCCCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCC
KLTLVVADTLKMQLELLRDGYSNALTGQRPFEMGEKSMDALLAIKKGEKVPEVIYTGLDL
EEEEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
VTKDNVAKLLN
EEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]