Click here to switch to the map view.

The map label for this gene is rbsA2 [H]

Identifier: 146338981

GI number: 146338981

Start: 2051296

End: 2052765

Strand: Direct

Name: rbsA2 [H]

Synonym: BRADO1928

Alternate gene names: 146338981

Gene position: 2051296-2052765 (Clockwise)

Preceding gene: 146338980

Following gene: 146338982

Centisome position: 27.51

GC content: 68.78

Gene sequence:

>1470_bases
ATGACCGCCACACGGTCTGAACTTGTGAGGCTGAGCGGCGTCGAGAAATACTTCGGCGCCGTCCGCGCGCTCGGCGGCGT
CGATCTGGCGCTCGCAGAGGGCGAATGCCTCGGGCTCGTCGGCCACAACGGCGCCGGCAAGTCGACGCTGATGCACATCC
TCGCCGGCACCGCCACGGCCGATCGCGGACAGCTCGCGATCGCCGGCGCGGTGCCGGCGAACTACGCGCCGGGGACGGCC
AAGCAGCTCGGCGTTCGCTGCGTATTCCAGGAGCTCTCGCTCTGTCCCAACCTGACGGTGGCCGAGAACACCCGCGTCTT
TCATCCCTCGCTCACCGGCTTCACATGGCGGCGACGAGCCGCCCGGCTGATCCTCGACAAGCTCGACGCGATCTTCCCGG
GCCATGGCATCGCGGCGTCCGATCTTGTGCAGGATCTTCCGATCGGCCGGCGCCAGATGGTGGAGGTGGCGCGCGCCTTC
ACCGTCACCGACGAGCCGGTCCGGCTCGTCATCCTCGACGAGCCGACCTCCTCGCTCGACGCCCACACCGCCGGCCAGCT
GCTGAGCTTCGTGCGCCGCGCGGTCGGCGAAGGGATCAGCTGCATCTTCATCTCACACCTGCTCGGCGAGGTGCTCGCCA
ATTGCGATCGGATCGTGGTGATGCGCGACGGCACGACGGTCGCCGACGCGCCGGCGACGGCGTTCGACCGCGACCGGCTG
GTCGCGGCGATGGGCGACGTCGAGCTCCACGCCCGCGACGTCAAGGCCGGCCAGGGACGCCTTCGGGGCCAATCGCCGTT
GCGTGTCCGCGCCCGGGCGGCGCGCCAGAGCGGAGCCGGGGAGCTGGTCGCGCATGAGGGCGAGATCATCGGGCTCGCCG
GGCTCGCCGGCCACGGCCAGACCAGCCTGCTGCTGTCGATCTTCGCCGCCGCGACACGCGCGACGACAGGCATGGAGGTC
ACGGCCAGCGTCGCCCTGGTCGCCGGTGACCGTCAGGCCGACGGCATCTTTCCGCTGTGGTCGATCGCGGAGAACATCGG
CGTCCGCTCGCTGCACAGCCTGCGCCACGGCCTGCTGATATCGCGCCGGCGCGAGCATGAGCTGGCCGCGCATTGGCGCG
ACAAGATCCGCATCCGCACGCCCGACATCGACAACAACATCCTCTCATTGTCGGGCGGCAATCAGCAGAAGGCGCTGTTT
GCCCGCGCGCTCGGCTCGGATGCGCGCATCGTGCTGATGGACGATCCGATGCGCGGCGTCGACGTCGGGACCAAGCTCGA
AGTCTATGAGCTGATCCGCGCGGAGGCCGACAGCGGCCGCACCTTCCTGTGGTACACCACGGAGTTCGACGAGTTGAAGC
AATGCGACCACGTCTATGTGTTCCGCAACGATGTGATCGTTGCCGACCTGACCCGCGACGAGCTGACCGAGCAAAAGGTC
ATCCAGTCCTCCTTCGCCGAAGCGGGCTGA

Upstream 100 bases:

>100_bases
GGCGAGCCACGAATACACCCAGGCCGAAGCGGTCGCTGCGATCAAGGCCAACATGAAGTGACGGCTGAACGCGCGTGCTG
TTTGCGAGCACAGGGGCCGG

Downstream 100 bases:

>100_bases
CGCCATGGCCTCGCTGAGCGCGCCGGACAGGCGCGGCCTTCCCCTGATCGGAACTCCGAACGTGCCGCGGCTGCTGCGTG
CGCTGCTGCCGGCGCTGTCG

Product: putative ribose transport ATP-binding protein (rbsA)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTATRSELVRLSGVEKYFGAVRALGGVDLALAEGECLGLVGHNGAGKSTLMHILAGTATADRGQLAIAGAVPANYAPGTA
KQLGVRCVFQELSLCPNLTVAENTRVFHPSLTGFTWRRRAARLILDKLDAIFPGHGIAASDLVQDLPIGRRQMVEVARAF
TVTDEPVRLVILDEPTSSLDAHTAGQLLSFVRRAVGEGISCIFISHLLGEVLANCDRIVVMRDGTTVADAPATAFDRDRL
VAAMGDVELHARDVKAGQGRLRGQSPLRVRARAARQSGAGELVAHEGEIIGLAGLAGHGQTSLLLSIFAAATRATTGMEV
TASVALVAGDRQADGIFPLWSIAENIGVRSLHSLRHGLLISRRREHELAAHWRDKIRIRTPDIDNNILSLSGGNQQKALF
ARALGSDARIVLMDDPMRGVDVGTKLEVYELIRAEADSGRTFLWYTTEFDELKQCDHVYVFRNDVIVADLTRDELTEQKV
IQSSFAEAG

Sequences:

>Translated_489_residues
MTATRSELVRLSGVEKYFGAVRALGGVDLALAEGECLGLVGHNGAGKSTLMHILAGTATADRGQLAIAGAVPANYAPGTA
KQLGVRCVFQELSLCPNLTVAENTRVFHPSLTGFTWRRRAARLILDKLDAIFPGHGIAASDLVQDLPIGRRQMVEVARAF
TVTDEPVRLVILDEPTSSLDAHTAGQLLSFVRRAVGEGISCIFISHLLGEVLANCDRIVVMRDGTTVADAPATAFDRDRL
VAAMGDVELHARDVKAGQGRLRGQSPLRVRARAARQSGAGELVAHEGEIIGLAGLAGHGQTSLLLSIFAAATRATTGMEV
TASVALVAGDRQADGIFPLWSIAENIGVRSLHSLRHGLLISRRREHELAAHWRDKIRIRTPDIDNNILSLSGGNQQKALF
ARALGSDARIVLMDDPMRGVDVGTKLEVYELIRAEADSGRTFLWYTTEFDELKQCDHVYVFRNDVIVADLTRDELTEQKV
IQSSFAEAG
>Mature_488_residues
TATRSELVRLSGVEKYFGAVRALGGVDLALAEGECLGLVGHNGAGKSTLMHILAGTATADRGQLAIAGAVPANYAPGTAK
QLGVRCVFQELSLCPNLTVAENTRVFHPSLTGFTWRRRAARLILDKLDAIFPGHGIAASDLVQDLPIGRRQMVEVARAFT
VTDEPVRLVILDEPTSSLDAHTAGQLLSFVRRAVGEGISCIFISHLLGEVLANCDRIVVMRDGTTVADAPATAFDRDRLV
AAMGDVELHARDVKAGQGRLRGQSPLRVRARAARQSGAGELVAHEGEIIGLAGLAGHGQTSLLLSIFAAATRATTGMEVT
ASVALVAGDRQADGIFPLWSIAENIGVRSLHSLRHGLLISRRREHELAAHWRDKIRIRTPDIDNNILSLSGGNQQKALFA
RALGSDARIVLMDDPMRGVDVGTKLEVYELIRAEADSGRTFLWYTTEFDELKQCDHVYVFRNDVIVADLTRDELTEQKVI
QSSFAEAG

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=205, Percent_Identity=30.2439024390244, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI6005701, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI89111135, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1790525, Length=509, Percent_Identity=31.237721021611, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1790190, Length=496, Percent_Identity=30.4435483870968, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI48995001, Length=495, Percent_Identity=31.5151515151515, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1789991, Length=510, Percent_Identity=30.5882352941176, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1788210, Length=493, Percent_Identity=33.2657200811359, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1788472, Length=501, Percent_Identity=29.7405189620758, Blast_Score=210, Evalue=2e-55,
Organism=Escherichia coli, GI1787792, Length=505, Percent_Identity=30.2970297029703, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1788897, Length=475, Percent_Identity=30.3157894736842, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1787712, Length=233, Percent_Identity=30.0429184549356, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=32.7659574468085, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87081782, Length=214, Percent_Identity=32.7102803738318, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787500, Length=220, Percent_Identity=32.2727272727273, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=27.4336283185841, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790544, Length=265, Percent_Identity=27.5471698113208, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788761, Length=262, Percent_Identity=29.3893129770992, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=32.4200913242009, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=262, Percent_Identity=24.8091603053435, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=28.099173553719, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1789032, Length=203, Percent_Identity=30.5418719211823, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=33.4883720930233, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=31.6742081447964, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI48994943, Length=248, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=24.3697478991597, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=29.9595141700405, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787759, Length=227, Percent_Identity=32.5991189427313, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=28.9915966386555, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786563, Length=220, Percent_Identity=29.0909090909091, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787547, Length=218, Percent_Identity=26.1467889908257, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788506, Length=231, Percent_Identity=29.8701298701299, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=30.3921568627451, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=32.0574162679426, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787164, Length=263, Percent_Identity=28.8973384030418, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789864, Length=235, Percent_Identity=25.9574468085106, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=25.2212389380531, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87082268, Length=220, Percent_Identity=24.0909090909091, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786345, Length=208, Percent_Identity=29.8076923076923, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71983523, Length=236, Percent_Identity=29.6610169491525, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=236, Percent_Identity=29.6610169491525, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=236, Percent_Identity=29.6610169491525, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=213, Percent_Identity=28.6384976525822, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=224, Percent_Identity=24.1071428571429, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992070, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 52656; Mature: 52525

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATRSELVRLSGVEKYFGAVRALGGVDLALAEGECLGLVGHNGAGKSTLMHILAGTATA
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCC
DRGQLAIAGAVPANYAPGTAKQLGVRCVFQELSLCPNLTVAENTRVFHPSLTGFTWRRRA
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHH
ARLILDKLDAIFPGHGIAASDLVQDLPIGRRQMVEVARAFTVTDEPVRLVILDEPTSSLD
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCCEEEEEECCCCCCCC
AHTAGQLLSFVRRAVGEGISCIFISHLLGEVLANCDRIVVMRDGTTVADAPATAFDRDRL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCHHH
VAAMGDVELHARDVKAGQGRLRGQSPLRVRARAARQSGAGELVAHEGEIIGLAGLAGHGQ
EEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCH
TSLLLSIFAAATRATTGMEVTASVALVAGDRQADGIFPLWSIAENIGVRSLHSLRHGLLI
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
SRRREHELAAHWRDKIRIRTPDIDNNILSLSGGNQQKALFARALGSDARIVLMDDPMRGV
HHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCC
DVGTKLEVYELIRAEADSGRTFLWYTTEFDELKQCDHVYVFRNDVIVADLTRDELTEQKV
CCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHHHH
IQSSFAEAG
HHHHHHCCC
>Mature Secondary Structure 
TATRSELVRLSGVEKYFGAVRALGGVDLALAEGECLGLVGHNGAGKSTLMHILAGTATA
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCC
DRGQLAIAGAVPANYAPGTAKQLGVRCVFQELSLCPNLTVAENTRVFHPSLTGFTWRRRA
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHH
ARLILDKLDAIFPGHGIAASDLVQDLPIGRRQMVEVARAFTVTDEPVRLVILDEPTSSLD
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHEECCCCEEEEEECCCCCCCC
AHTAGQLLSFVRRAVGEGISCIFISHLLGEVLANCDRIVVMRDGTTVADAPATAFDRDRL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCHHH
VAAMGDVELHARDVKAGQGRLRGQSPLRVRARAARQSGAGELVAHEGEIIGLAGLAGHGQ
EEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCH
TSLLLSIFAAATRATTGMEVTASVALVAGDRQADGIFPLWSIAENIGVRSLHSLRHGLLI
HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
SRRREHELAAHWRDKIRIRTPDIDNNILSLSGGNQQKALFARALGSDARIVLMDDPMRGV
HHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCC
DVGTKLEVYELIRAEADSGRTFLWYTTEFDELKQCDHVYVFRNDVIVADLTRDELTEQKV
CCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHHHH
IQSSFAEAG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]