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The map label for this gene is yphD [H]

Identifier: 146338982

GI number: 146338982

Start: 2052770

End: 2053753

Strand: Direct

Name: yphD [H]

Synonym: BRADO1929

Alternate gene names: 146338982

Gene position: 2052770-2053753 (Clockwise)

Preceding gene: 146338981

Following gene: 146338983

Centisome position: 27.53

GC content: 68.6

Gene sequence:

>984_bases
ATGGCCTCGCTGAGCGCGCCGGACAGGCGCGGCCTTCCCCTGATCGGAACTCCGAACGTGCCGCGGCTGCTGCGTGCGCT
GCTGCCGGCGCTGTCGCTCGCGCTCGTGCTGATCGGCATCGCCTGGCTCAATCCGCGCGCCATCAGCTATTTTGGCTTTA
CGCTGATGCTTAATCTCGCCGTGCCGATCGCGCTGGCGACGATCGCGCAGATGTTCGTCATCGCCGGAAACGACCTGGAT
CTGTCGATCGGCGCGTTCGTCGGCTTCGTCGGTTGCGTCACCGCGACCTGGCTGCGCGACGTCCCGCTGCTCGGAATCGT
CACGCTGCTCGGCTGCATCGCCGTCTACGCCGCGCTCGGCGCCCTGATCCATCTGCGCAACCTGCCATCGATCGTGGTCA
CGCTCGGCATGAGCTTCGTCTGGCAGGGACTCGCCGTCCTGATGCTGCCGAAGCCCGGCGGCAAGGCGCCGGACTGGCTG
CTGGAGATCATGCGCCTCAAGCCGCCGCTCGTGCCGTTCCCGATCGTTGCCGCGGTCGTGATCGCCGCGGTCGCCTATGT
CGGCCTGATGCGCACGTCCTACGGCGCCATCCTGCGCGGCTCCGGCGGCAACGCGGTGGCGATCAGCCGGGCCGGCTGGT
CGCTGTTGAAGGCCAAGATGACCCTGTTCGCCTGTGCCGGCCTGTTCGGCGTACTGTCGGGCCTCGCGCTGATCGGCACC
ACGACCTCGGCCGATGCGAATATCGGCAACGGCTACACCATGCTGTCGATCGCCGGCGTCATCCTCGGCGGCGGCGAGTT
CATCGGCGGCCGCGTATCGCCGATCGGCGCCGTCATCGGCGCGCTGACCCTGGCGCTGGCGGCGTCGCCGCTGTTGACCT
TCATGCGGATTCCGCCGGACTGGCAGGTCGCCGCCAACGGCGCCATCCTGATCGTCGTGCTCGCCGCGCGCGTGCTGATC
AGCCGCAAGGATGCGCAGCCATGA

Upstream 100 bases:

>100_bases
TATGTGTTCCGCAACGATGTGATCGTTGCCGACCTGACCCGCGACGAGCTGACCGAGCAAAAGGTCATCCAGTCCTCCTT
CGCCGAAGCGGGCTGACGCC

Downstream 100 bases:

>100_bases
AGGATGCGCAGCCATGAAGGGCACGCTCGCCGGCGTTCTCGCCCGGCCGTGGATATGGTCGTTCATCGGCGCGCTCGCGG
TGTGGCTGGCCGCCATCACC

Product: putative ribose ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MASLSAPDRRGLPLIGTPNVPRLLRALLPALSLALVLIGIAWLNPRAISYFGFTLMLNLAVPIALATIAQMFVIAGNDLD
LSIGAFVGFVGCVTATWLRDVPLLGIVTLLGCIAVYAALGALIHLRNLPSIVVTLGMSFVWQGLAVLMLPKPGGKAPDWL
LEIMRLKPPLVPFPIVAAVVIAAVAYVGLMRTSYGAILRGSGGNAVAISRAGWSLLKAKMTLFACAGLFGVLSGLALIGT
TTSADANIGNGYTMLSIAGVILGGGEFIGGRVSPIGAVIGALTLALAASPLLTFMRIPPDWQVAANGAILIVVLAARVLI
SRKDAQP

Sequences:

>Translated_327_residues
MASLSAPDRRGLPLIGTPNVPRLLRALLPALSLALVLIGIAWLNPRAISYFGFTLMLNLAVPIALATIAQMFVIAGNDLD
LSIGAFVGFVGCVTATWLRDVPLLGIVTLLGCIAVYAALGALIHLRNLPSIVVTLGMSFVWQGLAVLMLPKPGGKAPDWL
LEIMRLKPPLVPFPIVAAVVIAAVAYVGLMRTSYGAILRGSGGNAVAISRAGWSLLKAKMTLFACAGLFGVLSGLALIGT
TTSADANIGNGYTMLSIAGVILGGGEFIGGRVSPIGAVIGALTLALAASPLLTFMRIPPDWQVAANGAILIVVLAARVLI
SRKDAQP
>Mature_326_residues
ASLSAPDRRGLPLIGTPNVPRLLRALLPALSLALVLIGIAWLNPRAISYFGFTLMLNLAVPIALATIAQMFVIAGNDLDL
SIGAFVGFVGCVTATWLRDVPLLGIVTLLGCIAVYAALGALIHLRNLPSIVVTLGMSFVWQGLAVLMLPKPGGKAPDWLL
EIMRLKPPLVPFPIVAAVVIAAVAYVGLMRTSYGAILRGSGGNAVAISRAGWSLLKAKMTLFACAGLFGVLSGLALIGTT
TSADANIGNGYTMLSIAGVILGGGEFIGGRVSPIGAVIGALTLALAASPLLTFMRIPPDWQVAANGAILIVVLAARVLIS
RKDAQP

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=282, Percent_Identity=28.3687943262411, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33744; Mature: 33613

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLSAPDRRGLPLIGTPNVPRLLRALLPALSLALVLIGIAWLNPRAISYFGFTLMLNLA
CCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VPIALATIAQMFVIAGNDLDLSIGAFVGFVGCVTATWLRDVPLLGIVTLLGCIAVYAALG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ALIHLRNLPSIVVTLGMSFVWQGLAVLMLPKPGGKAPDWLLEIMRLKPPLVPFPIVAAVV
HHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
IAAVAYVGLMRTSYGAILRGSGGNAVAISRAGWSLLKAKMTLFACAGLFGVLSGLALIGT
HHHHHHHHHHHHCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTSADANIGNGYTMLSIAGVILGGGEFIGGRVSPIGAVIGALTLALAASPLLTFMRIPPD
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQVAANGAILIVVLAARVLISRKDAQP
CEEECCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASLSAPDRRGLPLIGTPNVPRLLRALLPALSLALVLIGIAWLNPRAISYFGFTLMLNLA
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VPIALATIAQMFVIAGNDLDLSIGAFVGFVGCVTATWLRDVPLLGIVTLLGCIAVYAALG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ALIHLRNLPSIVVTLGMSFVWQGLAVLMLPKPGGKAPDWLLEIMRLKPPLVPFPIVAAVV
HHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
IAAVAYVGLMRTSYGAILRGSGGNAVAISRAGWSLLKAKMTLFACAGLFGVLSGLALIGT
HHHHHHHHHHHHCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTSADANIGNGYTMLSIAGVILGGGEFIGGRVSPIGAVIGALTLALAASPLLTFMRIPPD
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQVAANGAILIVVLAARVLISRKDAQP
CEEECCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]