| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is fbp [H]
Identifier: 146338942
GI number: 146338942
Start: 2008643
End: 2008990
Strand: Direct
Name: fbp [H]
Synonym: BRADO1884
Alternate gene names: 146338942
Gene position: 2008643-2008990 (Clockwise)
Preceding gene: 146338941
Following gene: 146338944
Centisome position: 26.94
GC content: 64.37
Gene sequence:
>348_bases ATGACCACTCCCTCCGGACTGCAGATCATCGACACCAAGGAAGGTACCGGCGCGACGCCTGCCCGCGGTCAGACCTGCGT GATGCACTACACGGGCTGGCTCTATGAGAACGGCCAGAAGGGCAAGAAATTCGACTCCTCCGTCGATCGCAACGAGCCGT TCGAATTCCCGATCGGCATGAAGCGCGTGATCGCCGGCTGGGACGAGGGCGTCGCCACGATGAAGGTCGGCGGCAAGCGC ACCCTCATCATCCCGCCGGAGCTCGGCTACGGCGCCCGCGGCGCCGGCGGCGTGATCCCGCCGAATGCGACCTTGCTGTT CGATGTGGAATTGCTGGGGGTGAAGTAA
Upstream 100 bases:
>100_bases ACAAGCGATCCTGGTGGCGGCGAGCGCCGCGGCCGGCGCCGTGCTGGGCTCTCATGCAACTTCGGCACAGACCAGTTCAG CCAAACCGACAGGAAAGACC
Downstream 100 bases:
>100_bases GGGGCTCCAGTCGCCGCTGTTGCTGTTGAATCAGCAGATAGCGCGGTGCCAATGAATGCGCCCTCTCCCACCCTGGCGAA GCTCCGCTTCGCCTTGGGGG
Product: peptidylprolyl isomerase
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase; PPIase; Rotamase [H]
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MTTPSGLQIIDTKEGTGATPARGQTCVMHYTGWLYENGQKGKKFDSSVDRNEPFEFPIGMKRVIAGWDEGVATMKVGGKR TLIIPPELGYGARGAGGVIPPNATLLFDVELLGVK
Sequences:
>Translated_115_residues MTTPSGLQIIDTKEGTGATPARGQTCVMHYTGWLYENGQKGKKFDSSVDRNEPFEFPIGMKRVIAGWDEGVATMKVGGKR TLIIPPELGYGARGAGGVIPPNATLLFDVELLGVK >Mature_114_residues TTPSGLQIIDTKEGTGATPARGQTCVMHYTGWLYENGQKGKKFDSSVDRNEPFEFPIGMKRVIAGWDEGVATMKVGGKRT LIIPPELGYGARGAGGVIPPNATLLFDVELLGVK
Specific function: PPIases accelerate the folding of proteins [H]
COG id: COG0545
COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 1
Gene ontology:
Cell location: Cytoplasm And Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase FKBP-type domain [H]
Homologues:
Organism=Homo sapiens, GI17149836, Length=111, Percent_Identity=55.8558558558559, Blast_Score=120, Evalue=2e-28, Organism=Homo sapiens, GI4503725, Length=111, Percent_Identity=55.8558558558559, Blast_Score=120, Evalue=2e-28, Organism=Homo sapiens, GI4758380, Length=111, Percent_Identity=54.954954954955, Blast_Score=118, Evalue=1e-27, Organism=Homo sapiens, GI4503729, Length=111, Percent_Identity=45.945945945946, Blast_Score=96, Evalue=6e-21, Organism=Homo sapiens, GI224809329, Length=97, Percent_Identity=51.5463917525773, Blast_Score=93, Evalue=5e-20, Organism=Homo sapiens, GI224809327, Length=97, Percent_Identity=51.5463917525773, Blast_Score=93, Evalue=5e-20, Organism=Homo sapiens, GI4758384, Length=97, Percent_Identity=51.5463917525773, Blast_Score=93, Evalue=5e-20, Organism=Homo sapiens, GI206725530, Length=94, Percent_Identity=51.063829787234, Blast_Score=91, Evalue=1e-19, Organism=Homo sapiens, GI17149844, Length=94, Percent_Identity=51.063829787234, Blast_Score=91, Evalue=1e-19, Organism=Homo sapiens, GI17149842, Length=94, Percent_Identity=51.063829787234, Blast_Score=91, Evalue=1e-19, Organism=Homo sapiens, GI224809331, Length=109, Percent_Identity=47.7064220183486, Blast_Score=91, Evalue=2e-19, Organism=Homo sapiens, GI192448443, Length=86, Percent_Identity=51.1627906976744, Blast_Score=84, Evalue=2e-17, Organism=Homo sapiens, GI8923659, Length=95, Percent_Identity=42.1052631578947, Blast_Score=76, Evalue=6e-15, Organism=Homo sapiens, GI206725547, Length=115, Percent_Identity=36.5217391304348, Blast_Score=75, Evalue=1e-14, Organism=Homo sapiens, GI150010552, Length=94, Percent_Identity=38.2978723404255, Blast_Score=74, Evalue=2e-14, Organism=Homo sapiens, GI33469985, Length=96, Percent_Identity=40.625, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI17149839, Length=70, Percent_Identity=54.2857142857143, Blast_Score=73, Evalue=6e-14, Organism=Homo sapiens, GI31317231, Length=116, Percent_Identity=37.0689655172414, Blast_Score=72, Evalue=8e-14, Organism=Homo sapiens, GI4503727, Length=103, Percent_Identity=38.8349514563107, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI7706131, Length=106, Percent_Identity=35.8490566037736, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87082390, Length=113, Percent_Identity=51.3274336283186, Blast_Score=100, Evalue=2e-23, Organism=Escherichia coli, GI1789745, Length=114, Percent_Identity=47.3684210526316, Blast_Score=84, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71993519, Length=102, Percent_Identity=54.9019607843137, Blast_Score=98, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17540882, Length=93, Percent_Identity=51.6129032258064, Blast_Score=93, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561782, Length=101, Percent_Identity=46.5346534653465, Blast_Score=77, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561778, Length=111, Percent_Identity=40.5405405405405, Blast_Score=66, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324194, Length=110, Percent_Identity=52.7272727272727, Blast_Score=99, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6320727, Length=93, Percent_Identity=55.9139784946236, Blast_Score=97, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6323566, Length=110, Percent_Identity=42.7272727272727, Blast_Score=73, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323482, Length=110, Percent_Identity=40.9090909090909, Blast_Score=72, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363946, Length=108, Percent_Identity=53.7037037037037, Blast_Score=120, Evalue=1e-28, Organism=Drosophila melanogaster, GI17352457, Length=108, Percent_Identity=53.7037037037037, Blast_Score=120, Evalue=1e-28, Organism=Drosophila melanogaster, GI24655568, Length=111, Percent_Identity=54.0540540540541, Blast_Score=114, Evalue=2e-26, Organism=Drosophila melanogaster, GI24583150, Length=104, Percent_Identity=51.9230769230769, Blast_Score=100, Evalue=1e-22, Organism=Drosophila melanogaster, GI24647110, Length=113, Percent_Identity=46.0176991150442, Blast_Score=94, Evalue=2e-20, Organism=Drosophila melanogaster, GI21356629, Length=94, Percent_Identity=52.1276595744681, Blast_Score=76, Evalue=4e-15,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001179 [H]
Pfam domain/function: PF00254 FKBP_C [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 12310; Mature: 12179
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: PS50059 FKBP_PPIASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPSGLQIIDTKEGTGATPARGQTCVMHYTGWLYENGQKGKKFDSSVDRNEPFEFPIGM CCCCCCCEEEECCCCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCH KRVIAGWDEGVATMKVGGKRTLIIPPELGYGARGAGGVIPPNATLLFDVELLGVK HHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECC >Mature Secondary Structure TTPSGLQIIDTKEGTGATPARGQTCVMHYTGWLYENGQKGKKFDSSVDRNEPFEFPIGM CCCCCCEEEECCCCCCCCCCCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCH KRVIAGWDEGVATMKVGGKRTLIIPPELGYGARGAGGVIPPNATLLFDVELLGVK HHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]