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The map label for this gene is cph2 [H]

Identifier: 146338937

GI number: 146338937

Start: 2002875

End: 2004785

Strand: Direct

Name: cph2 [H]

Synonym: BRADO1877

Alternate gene names: 146338937

Gene position: 2002875-2004785 (Clockwise)

Preceding gene: 146338936

Following gene: 146338941

Centisome position: 26.86

GC content: 66.51

Gene sequence:

>1911_bases
ATGGACGTTGCTGCCACCAGAGTCGATCTGAGCCGCCTGCCGCTGTGGGCTGCGGCTGTTCTTGCGCTCGTGTGCGGAGC
GATCCTGGCCTTCAGCGGCTGGAGCGAATGGACGTCGCGCAATGCCGAGGTGCACAACGCCGAGGTCGACCTCGGCAATC
TCGCGAGATCGCTGACACAGCATGTGGAGGATACCGTCGAGCTGGCGGATTCCCTGATGCGCGGCGTTGTCACAGCGCTC
GAGACGGACGACGGCAAGCCCGGAGCTATCACGCGTCTGCAGACGATCCTCAAGGCGAGGAAAGCGACGCTCGGACGCAT
CCGCGGCGTCTTTGCCTACGACGCCAATGGCGACTGGCTCGCCACGACCGAGGACGTTACGCTCACCAACTACAACAATG
CCGACCGTGACTACTTCACCCATCACCGATCCTCGGCGGACCGCTCGCTGCTGGTCGGCCGCCCGGTGCAGAGCAAATCC
GGCGGTCAATGGGTCATCACGCTCTCGCGACGCTGGAATCACGCCGACGGCAGTTTCGGCGGCGTCGTGCTCGCGACCAT
CGATGTCGCCTATTTCGCCGGGTTCTACCGGCAGTTCGACGTCGGACAGCAGGGCACGATCAGTCTGATCAGCCGCGATG
GTCTCGTGCTCGCAGACAATTCCGAGCCGGACTCGCACGGTCTCGGCCAGCCGATGGTCGAAGCGATTCCATATCATCCG
GCCTCCGGCACGCTGCGGTTCCGCCGCTTCGGCGAGAAGTCGGAGCGCATCGCCTTTTATCAGCACGCGCAGCGGTATCC
TTTCCTCATTCTGGCCACGCGGACGGAGACCGAGGTGCTCGCCGAGTGGAAGCGCGATGCGGTCGTGCGGTTCACCGTCC
TGGTGATCCTGCTCGGGCTCGTCGTCGCAATCGGCATTTTCCTGGTCAAGCAGCTGTCGAGGCGGCAGCAGCTTGCGGCC
GCGCTCGCGGCCAAGGAGGAGAATTTCCGGTTGCTCGCCGAAGGCTCCAGCGACATCGTGACGCGCATCGAGCTCGACGA
GTGCATCGGCTACGTCTCGCCGTCGACGTCGCGCGTGCTCGGCTGGCACCCCTCGCAGTTGCTTGGCAAGCGCGCAATCT
CCGGCGTGCATCCGCTCGACCGGCCGCAATTGCAGGAGATCCTCGATCAGCTCCGGAAGGGCATGGCCGACGAAGCGCGC
GCAACCTATCGGATGCGCCGCCGCGACAAATCGGAGATCTGGGTCGAGGCCACCATCCGCGCCACCCGCCGACCCGACGG
CGAGCTCGATGGTTTCGTTGCCGTCACGCGCGACGTGACGCAGCAGAAGAACCTGCAGGGCCGGCTCGAGACGCTGGCGA
TCGAGGACGGACTCACCGGGCTCGCCAACCGCCGCCGCTTCGACGAGCGGCTGCTGGAGGAGTGGGGCAGGGCCTACCGC
GAAAAGACATCGCTCGCGTTGTTGATGATCGATATCGATCACTTCAAGGCCTTCAACGACGCTTATGGCCATCCGGCCGG
CGACGAATGCCTGCACACCGTTGCCGGAATCCTCGCCGACGAAGCCCAGCGTAGTTCGGACCTCGTGGCCCGCTATGGCG
GCGAGGAGTTCGCGATCCTGCTGCCGAACACCGATGCCGCCGGTTGCGCGCGGCTCGGCGAGCGGATCCGGCGGGCGCTG
CATGCCGCCGCGCTCGTCCATGCGCACAATCCGCCGGGCATCGTGACGGCCAGCCTCGGCGGCGCCGTCTGCCGTCCAGG
CCTGGAACGTTCGGCGGGTCCGGCCTCGCTGATCGAGGCGGCCGACCGCGCGCTCTATGTCGCCAAGGACGGTGGGCGCG
ACCGCATGGTCATGGCGGGCGAGGTCGTGGAGCTGCCGTCCAGCAAGGCGCCGGCCACCGTGCCAGCTTGA

Upstream 100 bases:

>100_bases
GTAGTCTTACGGAGGACTCGCAGCGCCTTCGAACGGAACATGTTTCAGAGTTAGCTAACGCGTCCATGCGAGTCTGCCGC
GGTCCGGAGAGTTCCGCGGA

Downstream 100 bases:

>100_bases
GATCGTCGCGCGCTCAGTAGTGCGGTGGCGGCTCATTCCGCGGCCCCTCGGTATTGCTCTGGGCCTCCTCGAGCCGCTCG
ACGAGCAGCGCGATCTGCCG

Product: putative signal peptide

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MDVAATRVDLSRLPLWAAAVLALVCGAILAFSGWSEWTSRNAEVHNAEVDLGNLARSLTQHVEDTVELADSLMRGVVTAL
ETDDGKPGAITRLQTILKARKATLGRIRGVFAYDANGDWLATTEDVTLTNYNNADRDYFTHHRSSADRSLLVGRPVQSKS
GGQWVITLSRRWNHADGSFGGVVLATIDVAYFAGFYRQFDVGQQGTISLISRDGLVLADNSEPDSHGLGQPMVEAIPYHP
ASGTLRFRRFGEKSERIAFYQHAQRYPFLILATRTETEVLAEWKRDAVVRFTVLVILLGLVVAIGIFLVKQLSRRQQLAA
ALAAKEENFRLLAEGSSDIVTRIELDECIGYVSPSTSRVLGWHPSQLLGKRAISGVHPLDRPQLQEILDQLRKGMADEAR
ATYRMRRRDKSEIWVEATIRATRRPDGELDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYR
EKTSLALLMIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAILLPNTDAAGCARLGERIRRAL
HAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEAADRALYVAKDGGRDRMVMAGEVVELPSSKAPATVPA

Sequences:

>Translated_636_residues
MDVAATRVDLSRLPLWAAAVLALVCGAILAFSGWSEWTSRNAEVHNAEVDLGNLARSLTQHVEDTVELADSLMRGVVTAL
ETDDGKPGAITRLQTILKARKATLGRIRGVFAYDANGDWLATTEDVTLTNYNNADRDYFTHHRSSADRSLLVGRPVQSKS
GGQWVITLSRRWNHADGSFGGVVLATIDVAYFAGFYRQFDVGQQGTISLISRDGLVLADNSEPDSHGLGQPMVEAIPYHP
ASGTLRFRRFGEKSERIAFYQHAQRYPFLILATRTETEVLAEWKRDAVVRFTVLVILLGLVVAIGIFLVKQLSRRQQLAA
ALAAKEENFRLLAEGSSDIVTRIELDECIGYVSPSTSRVLGWHPSQLLGKRAISGVHPLDRPQLQEILDQLRKGMADEAR
ATYRMRRRDKSEIWVEATIRATRRPDGELDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYR
EKTSLALLMIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAILLPNTDAAGCARLGERIRRAL
HAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEAADRALYVAKDGGRDRMVMAGEVVELPSSKAPATVPA
>Mature_636_residues
MDVAATRVDLSRLPLWAAAVLALVCGAILAFSGWSEWTSRNAEVHNAEVDLGNLARSLTQHVEDTVELADSLMRGVVTAL
ETDDGKPGAITRLQTILKARKATLGRIRGVFAYDANGDWLATTEDVTLTNYNNADRDYFTHHRSSADRSLLVGRPVQSKS
GGQWVITLSRRWNHADGSFGGVVLATIDVAYFAGFYRQFDVGQQGTISLISRDGLVLADNSEPDSHGLGQPMVEAIPYHP
ASGTLRFRRFGEKSERIAFYQHAQRYPFLILATRTETEVLAEWKRDAVVRFTVLVILLGLVVAIGIFLVKQLSRRQQLAA
ALAAKEENFRLLAEGSSDIVTRIELDECIGYVSPSTSRVLGWHPSQLLGKRAISGVHPLDRPQLQEILDQLRKGMADEAR
ATYRMRRRDKSEIWVEATIRATRRPDGELDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYR
EKTSLALLMIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAILLPNTDAAGCARLGERIRRAL
HAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEAADRALYVAKDGGRDRMVMAGEVVELPSSKAPATVPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=218, Percent_Identity=33.0275229357798, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1788381, Length=317, Percent_Identity=28.0757097791798, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=40.4907975460123, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=190, Percent_Identity=38.4210526315789, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=34.5238095238095, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI87082007, Length=188, Percent_Identity=33.5106382978723, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=37.7245508982036, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=32.484076433121, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=162, Percent_Identity=28.3950617283951, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 69768; Mature: 69768

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVAATRVDLSRLPLWAAAVLALVCGAILAFSGWSEWTSRNAEVHNAEVDLGNLARSLTQ
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCHHHHHHHHHH
HVEDTVELADSLMRGVVTALETDDGKPGAITRLQTILKARKATLGRIRGVFAYDANGDWL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEE
ATTEDVTLTNYNNADRDYFTHHRSSADRSLLVGRPVQSKSGGQWVITLSRRWNHADGSFG
EECCCEEEECCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
GVVLATIDVAYFAGFYRQFDVGQQGTISLISRDGLVLADNSEPDSHGLGQPMVEAIPYHP
CEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHHHHCCCCC
ASGTLRFRRFGEKSERIAFYQHAQRYPFLILATRTETEVLAEWKRDAVVRFTVLVILLGL
CCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VVAIGIFLVKQLSRRQQLAAALAAKEENFRLLAEGSSDIVTRIELDECIGYVSPSTSRVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEHHHHHCCCCCCCCCEE
GWHPSQLLGKRAISGVHPLDRPQLQEILDQLRKGMADEARATYRMRRRDKSEIWVEATIR
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEE
ATRRPDGELDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYR
ECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EKTSLALLMIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAIL
HCCCEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LPNTDAAGCARLGERIRRALHAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEA
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
ADRALYVAKDGGRDRMVMAGEVVELPSSKAPATVPA
CCCEEEEEECCCCCCEEEECCCEECCCCCCCCCCCC
>Mature Secondary Structure
MDVAATRVDLSRLPLWAAAVLALVCGAILAFSGWSEWTSRNAEVHNAEVDLGNLARSLTQ
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCHHHHHHHHHH
HVEDTVELADSLMRGVVTALETDDGKPGAITRLQTILKARKATLGRIRGVFAYDANGDWL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEE
ATTEDVTLTNYNNADRDYFTHHRSSADRSLLVGRPVQSKSGGQWVITLSRRWNHADGSFG
EECCCEEEECCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
GVVLATIDVAYFAGFYRQFDVGQQGTISLISRDGLVLADNSEPDSHGLGQPMVEAIPYHP
CEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHHHHCCCCC
ASGTLRFRRFGEKSERIAFYQHAQRYPFLILATRTETEVLAEWKRDAVVRFTVLVILLGL
CCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VVAIGIFLVKQLSRRQQLAAALAAKEENFRLLAEGSSDIVTRIELDECIGYVSPSTSRVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEHHHHHCCCCCCCCCEE
GWHPSQLLGKRAISGVHPLDRPQLQEILDQLRKGMADEARATYRMRRRDKSEIWVEATIR
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEE
ATRRPDGELDGFVAVTRDVTQQKNLQGRLETLAIEDGLTGLANRRRFDERLLEEWGRAYR
ECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EKTSLALLMIDIDHFKAFNDAYGHPAGDECLHTVAGILADEAQRSSDLVARYGGEEFAIL
HCCCEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LPNTDAAGCARLGERIRRALHAAALVHAHNPPGIVTASLGGAVCRPGLERSAGPASLIEA
ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHH
ADRALYVAKDGGRDRMVMAGEVVELPSSKAPATVPA
CCCEEEEEECCCCCCEEEECCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]