Click here to switch to the map view.

The map label for this gene is amdA [H]

Identifier: 146338609

GI number: 146338609

Start: 1643353

End: 1644594

Strand: Reverse

Name: amdA [H]

Synonym: BRADO1537

Alternate gene names: 146338609

Gene position: 1644594-1643353 (Counterclockwise)

Preceding gene: 146338610

Following gene: 146338608

Centisome position: 22.06

GC content: 65.14

Gene sequence:

>1242_bases
ATGAAGCACCATCTGCTGCCGGTGTCCAACAAGACCGTTCACTGGGGCTATTTCTCCAAGGTGGTGACACCCGCTCTCAC
CTTGCGCTCCGGCGACCGCGCCACGATCGAGACGCTGACGCATCACGCCAATGACGACTACGAGCGCATGATCAAGGACG
ATCCCGGTGCCGAGAGCGTGTTCAAGTGGACGAAGGAACACAAGGCCGTGGCGCGGCGCGGTTCGGGGCCGACCGAAGGC
CCGTTCATCCGCGGCTCCGGCGAAGGAATCGGCGTGCATCTCCTGACCGGCCCGGTGGCGATCGAAGGGGCCGAGCCCGG
CGACGTGCTGGAGGTGCGCATCCTCGACATCCGGCCCCGGCCGAGCCAATGCGGCTGCCACGCCGGCAAATGCTTCGGCT
CCAACGCCGCCGCCAATTGGGGCTTCCACTATCATGATCTGATCGAGGAGCCGAAGCCGCGCGAGGTCGTCACCATCTTC
GAGCTCGACACGGCAGGCGAGCCGTTCGCCAAGGCCGTCTACAACTACGTCTGGACGCCGCAGACCGATCCGGACGGCAT
CGTGCATCCGACCATCGACTATCCCGGCGTGCCGGTCGACCACACCACGATCAAGAAGCGCGAGAACATCCTGCCCGGCA
TCAAGGTGCCGGCGCGGCTGCATTTCGGCACCATGGGGCTGGCGCCGTCGGAAGCCGACTATGTCTCCTCGATCCCGCCG
AGCTATACCGGCGGCAACATCGACGACTGGCGCATCGGCAAGGGCGCGCGGATGTATTATCCGGTCGCCGTGCCCGGCGC
CTATTTCTCGGTCGGCGATCCCCATGCCGCACAGGGCGACAGCGAGCTCGGCGGCACGGCGATCGAAACCTCGCTGACCG
GCGACTTCGAGTTCATCCTGCACAAGAAGAACGATCTCGGCGGCACCCAGCTCGAAGGCCTGACGCATCCGCTGCTCGAG
ACCAGCGAGGCCTGGTCGGTCTACGGCTTCACCTATCCGAACTATCTCGCCGAGCTCGGCGCCAACGCGCAGACCGAGAT
CGCCAACCACTCCAGCCTCGACCGCGCCATGCGCGACGCCTTCCGCAAGCTCCGCCGCTTCCTGATGACGGTGCATCATC
TGAGCGAGGATGAGGCGATCTCGCTGATGTCGGTCGGCGCCGATTTCGGCGTGACGCAGGTCGTCGATGCAAATTGGGGC
GTGCACGGGACGATCCGGAAGAACGTGTTCCGGTGTGATTGA

Upstream 100 bases:

>100_bases
CCTCTCGGTGATGGAGGCCGAGCGGCCGAAGGACGCGGTCGCATGAGCGCGCCCCACCGATTTCTCAACATCCTCGATCT
CTGAGCAAAGAGGCCCTCGC

Downstream 100 bases:

>100_bases
TGTCGACGTGACGCAAGCTCTCGCCCCATGGACCGTGCGCTCCCTCCCCCGCTTGCGGGGGAGGGCTGGGGTGGGGGAAC
CCCAAGCGACACTGCCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MKHHLLPVSNKTVHWGYFSKVVTPALTLRSGDRATIETLTHHANDDYERMIKDDPGAESVFKWTKEHKAVARRGSGPTEG
PFIRGSGEGIGVHLLTGPVAIEGAEPGDVLEVRILDIRPRPSQCGCHAGKCFGSNAAANWGFHYHDLIEEPKPREVVTIF
ELDTAGEPFAKAVYNYVWTPQTDPDGIVHPTIDYPGVPVDHTTIKKRENILPGIKVPARLHFGTMGLAPSEADYVSSIPP
SYTGGNIDDWRIGKGARMYYPVAVPGAYFSVGDPHAAQGDSELGGTAIETSLTGDFEFILHKKNDLGGTQLEGLTHPLLE
TSEAWSVYGFTYPNYLAELGANAQTEIANHSSLDRAMRDAFRKLRRFLMTVHHLSEDEAISLMSVGADFGVTQVVDANWG
VHGTIRKNVFRCD

Sequences:

>Translated_413_residues
MKHHLLPVSNKTVHWGYFSKVVTPALTLRSGDRATIETLTHHANDDYERMIKDDPGAESVFKWTKEHKAVARRGSGPTEG
PFIRGSGEGIGVHLLTGPVAIEGAEPGDVLEVRILDIRPRPSQCGCHAGKCFGSNAAANWGFHYHDLIEEPKPREVVTIF
ELDTAGEPFAKAVYNYVWTPQTDPDGIVHPTIDYPGVPVDHTTIKKRENILPGIKVPARLHFGTMGLAPSEADYVSSIPP
SYTGGNIDDWRIGKGARMYYPVAVPGAYFSVGDPHAAQGDSELGGTAIETSLTGDFEFILHKKNDLGGTQLEGLTHPLLE
TSEAWSVYGFTYPNYLAELGANAQTEIANHSSLDRAMRDAFRKLRRFLMTVHHLSEDEAISLMSVGADFGVTQVVDANWG
VHGTIRKNVFRCD
>Mature_413_residues
MKHHLLPVSNKTVHWGYFSKVVTPALTLRSGDRATIETLTHHANDDYERMIKDDPGAESVFKWTKEHKAVARRGSGPTEG
PFIRGSGEGIGVHLLTGPVAIEGAEPGDVLEVRILDIRPRPSQCGCHAGKCFGSNAAANWGFHYHDLIEEPKPREVVTIF
ELDTAGEPFAKAVYNYVWTPQTDPDGIVHPTIDYPGVPVDHTTIKKRENILPGIKVPARLHFGTMGLAPSEADYVSSIPP
SYTGGNIDDWRIGKGARMYYPVAVPGAYFSVGDPHAAQGDSELGGTAIETSLTGDFEFILHKKNDLGGTQLEGLTHPLLE
TSEAWSVYGFTYPNYLAELGANAQTEIANHSSLDRAMRDAFRKLRRFLMTVHHLSEDEAISLMSVGADFGVTQVVDANWG
VHGTIRKNVFRCD

Specific function: Allows acetamide to be used as a sole carbon or nitrogen source [H]

COG id: COG2421

COG function: function code C; Predicted acetamidase/formamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acetamidase/formamidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004304 [H]

Pfam domain/function: PF03069 FmdA_AmdA [H]

EC number: NA

Molecular weight: Translated: 45251; Mature: 45251

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHLLPVSNKTVHWGYFSKVVTPALTLRSGDRATIETLTHHANDDYERMIKDDPGAESV
CCCCEECCCCCEEECHHHHHHHHHHEEECCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHH
FKWTKEHKAVARRGSGPTEGPFIRGSGEGIGVHLLTGPVAIEGAEPGDVLEVRILDIRPR
HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCEEEECCCCCCEEEEEEEEECCC
PSQCGCHAGKCFGSNAAANWGFHYHDLIEEPKPREVVTIFELDTAGEPFAKAVYNYVWTP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHEECC
QTDPDGIVHPTIDYPGVPVDHTTIKKRENILPGIKVPARLHFGTMGLAPSEADYVSSIPP
CCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCC
SYTGGNIDDWRIGKGARMYYPVAVPGAYFSVGDPHAAQGDSELGGTAIETSLTGDFEFIL
CCCCCCCCCEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
HKKNDLGGTQLEGLTHPLLETSEAWSVYGFTYPNYLAELGANAQTEIANHSSLDRAMRDA
EECCCCCCCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHCCCCHHHHHCHHHHHHHHHHH
FRKLRRFLMTVHHLSEDEAISLMSVGADFGVTQVVDANWGVHGTIRKNVFRCD
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCEEHHCCEEECC
>Mature Secondary Structure
MKHHLLPVSNKTVHWGYFSKVVTPALTLRSGDRATIETLTHHANDDYERMIKDDPGAESV
CCCCEECCCCCEEECHHHHHHHHHHEEECCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHH
FKWTKEHKAVARRGSGPTEGPFIRGSGEGIGVHLLTGPVAIEGAEPGDVLEVRILDIRPR
HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCEEEECCCCCCEEEEEEEEECCC
PSQCGCHAGKCFGSNAAANWGFHYHDLIEEPKPREVVTIFELDTAGEPFAKAVYNYVWTP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHEECC
QTDPDGIVHPTIDYPGVPVDHTTIKKRENILPGIKVPARLHFGTMGLAPSEADYVSSIPP
CCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCC
SYTGGNIDDWRIGKGARMYYPVAVPGAYFSVGDPHAAQGDSELGGTAIETSLTGDFEFIL
CCCCCCCCCEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
HKKNDLGGTQLEGLTHPLLETSEAWSVYGFTYPNYLAELGANAQTEIANHSSLDRAMRDA
EECCCCCCCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHCCCCHHHHHCHHHHHHHHHHH
FRKLRRFLMTVHHLSEDEAISLMSVGADFGVTQVVDANWGVHGTIRKNVFRCD
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCEEHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8473863 [H]