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The map label for this gene is rhrA [H]

Identifier: 146338608

GI number: 146338608

Start: 1640745

End: 1643171

Strand: Reverse

Name: rhrA [H]

Synonym: BRADO1536

Alternate gene names: 146338608

Gene position: 1643171-1640745 (Counterclockwise)

Preceding gene: 146338609

Following gene: 146338607

Centisome position: 22.04

GC content: 67.28

Gene sequence:

>2427_bases
ATGAGAAGAACACTGAGCATCACGGGCCCGCGACCGACAGTGGAGCTCATCTGGCACGGGGGTTGCTTCGACGTCCCGAA
CCCGGGGCGTGCCATGAGTTTCCGTCCGTTCACCAGCGAATCCTATGCGCAGGGCGAGCGCCCCGAGGCGTGGCGCGATG
TGCTGAATGCGGCCGGGCTGCAGCCGGCCGCCAAATCGCCGTTCGATGACGGGCACGCGACCGCCTCGCATCGCAGCGCG
CCGGGGATCGCGCTGTCGCGGCTGTCCGCGGGCGCGCAGGCTGTCGCGGCGGTTCCGCAGGTCCAGGAGGACCTGCCGAT
CGCGCTGCTTGCGATCGAGGATGGCGCCGTGCTCCGCTGCGGCGACACGCATCGCATCATTCCGTCCGGGCATCTCATCT
TGCTGCCGCGCACGGCCGATTGGAGCCTCGCGTTCCAGCGGGACCTGCGCGCGATCGTGCTGTCGGTCACCTCAGCCGCC
TTGCACGGCCGCATCAGTGGCAAGCTGAAATTCGCCAGGCCACAGGTAATCGCGCCGAGCGGGCTCGCCGACGTCGTCTG
CCGCACCATCGAGGCGACCGCGCGGACGCTCGACATGTTGAGCGAAGCCGAATGGAGCACGGTGGCGCAAAGTCTGGTTG
ATCTCTTGCTCACGCTCGCGCATCAGCAGGCCGTGCCGACATCGGAGACCGGGAGCAGCGCGACCCAAGCGGCGATCCTG
CACCGGATCTGCCAGGCGATCGAGCGAGAGCTCGACGATGCCGAGCTGACGCCGACGCGCGTCGCGCAAGCCGAGGGCAT
CTCCGAGCGATATCTGCAGAAACTGTTCGAGGGCGCCGGCGACAACTTCACGCACTACGTCAAGGAACGGCGTCTGCAGC
GCGCCTGGACCGATCTCTCCAATCCGGCCGAGGCGCATCATTCGATCTCCGAAATCGCCTATCGCTACGGCTTCGCCGAT
TCGGCCCATTTCAGCCGCAGCTTTCGCGCCCGCTTCGGCCTGTCGCCGCGCGAGTTCCGCCAGCAGAAGGCCGAGCAGGC
GGTGACATCAGCGGCGCCGCGGGGCCAACGCGGCTGGCCGCAGGACGCGCTGGCGCAACAGCGCGGCTGCCAGACGCAGG
CCTCCCTGAAAAGCAGCACCGCCCTGCCCGCCCCGGCCAACGACCAGGACGCGCGGCAACGGCATCATCATCTCGCGGTG
TCCGCGGAGCGCGTGCATTGGGGCTATTTCAGCCGCTCGCTGCCGCCACAGCTCGAGATCGCCTCCGGCGACACGATCAC
CGTGGAAACACTGACCCAGCATGCTTCCGATGATCCGGAGCTGATGATCGCGGGCGACGACGGCGCGCTCAGCGTGTTCG
GCTGGAGCAAGACCAGGAAGAATGTCGATCGCCGTGGCGCCGGGCCGATGGATGCCAGCGTGTTCGGCCGCGGCGCCGGC
GAAGGCTTTGGCGTGCACATCTGCACCGGCCCGGTGGCGATCAAGGATGCGCAGCCCGGCGACGTGCTCGAGGTCCGCAT
CCTCGACATCGTGCCGCGGCTGAGCCGCAGCCCGAAGCACCGGGGCCGGGTGTTCGGCTCCAGCGTCGCGGCATGGTGGG
GCTATCATTACAACGAGCTGATCGCAGCCCCAGCGCCGCGCGAGGCCGTGACGATCTACGAGATCTTCGCCGGTGATCCC
GAGCCGCATGCACGCGCGCTGTACTCCTATCGTTGGGAGCCGCAGACCGATCCGGCCGGCGTGGTGCATGCGACCTACGA
CTATCCCGGCGTGCCGGTCGCGCCCGGGAGCATCAAGCGCCGCCACGGCGTGCTCGACAACATCCGCATTCCCCTGCGAC
CCCATTTCGGCGTCATCGCGGTGGCGCCGCGCGAAGTCGATTTCGTCGATTCGATTCCGCCGTCCTATTTCGGCGGCAAT
CTCGACAATTGGCGACTCGGCAAGGGATCGACTGTCTATCTGCCGGTCGCGGTGCCCGGCGCCCTGCTGTCGGTCGGCGA
TCCCCATGCGACGCAAGGCGACGGCGAGCTCGGCGGCACCGCGATCGAATGCTCGATGACCGGCACCTTCCAGGTCATCC
TCCACAAGAAGACGCAGCTCGCCGGCAAACCCTTTGCCGATCTCACCTATCCGCTGATCGAGACCGAAACCGACTGGGTG
CTGACCGGCTTCAGCCATCCGAACTATCTGGCCGAGTTCGGCGCGCAGGGCCAGAGCGAGGTCTACGCCAAATCGTCGCT
CGACCTCGCGATGAAGGACGCGTTCCGCAAGATGCGCCGCTTCCTCATGCACATCAAAGGGCTCAGCGAGGACGAGGCGG
TGGCGCTGATGTCGGCGGCGGTCGATTTCGGCGTCACGCAGGTGGTCGACGGCAATTGGGGCGTCCACGCGATCCTGAGC
AAGCGGCTGTTCGAGGATGCGGATTGA

Upstream 100 bases:

>100_bases
CCAAGCGACACTGCCGCCATGGCCCCCACCCCTGACCCTTCCCGCAAGGGGGAGGGGAACGCGCCGCGCATGAGGCGACA
GCGTCGATTGCCAGAAGCAC

Downstream 100 bases:

>100_bases
CCTCACAAGATTAGTAGGGTGGGCAAAGGCGCGCCCGCTCTGCTGCCGTATCAGATGATTTGTCCCGCGCCGTGCCCACC
GCCGCTCAGATGGTGGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 808; Mature: 808

Protein sequence:

>808_residues
MRRTLSITGPRPTVELIWHGGCFDVPNPGRAMSFRPFTSESYAQGERPEAWRDVLNAAGLQPAAKSPFDDGHATASHRSA
PGIALSRLSAGAQAVAAVPQVQEDLPIALLAIEDGAVLRCGDTHRIIPSGHLILLPRTADWSLAFQRDLRAIVLSVTSAA
LHGRISGKLKFARPQVIAPSGLADVVCRTIEATARTLDMLSEAEWSTVAQSLVDLLLTLAHQQAVPTSETGSSATQAAIL
HRICQAIERELDDAELTPTRVAQAEGISERYLQKLFEGAGDNFTHYVKERRLQRAWTDLSNPAEAHHSISEIAYRYGFAD
SAHFSRSFRARFGLSPREFRQQKAEQAVTSAAPRGQRGWPQDALAQQRGCQTQASLKSSTALPAPANDQDARQRHHHLAV
SAERVHWGYFSRSLPPQLEIASGDTITVETLTQHASDDPELMIAGDDGALSVFGWSKTRKNVDRRGAGPMDASVFGRGAG
EGFGVHICTGPVAIKDAQPGDVLEVRILDIVPRLSRSPKHRGRVFGSSVAAWWGYHYNELIAAPAPREAVTIYEIFAGDP
EPHARALYSYRWEPQTDPAGVVHATYDYPGVPVAPGSIKRRHGVLDNIRIPLRPHFGVIAVAPREVDFVDSIPPSYFGGN
LDNWRLGKGSTVYLPVAVPGALLSVGDPHATQGDGELGGTAIECSMTGTFQVILHKKTQLAGKPFADLTYPLIETETDWV
LTGFSHPNYLAEFGAQGQSEVYAKSSLDLAMKDAFRKMRRFLMHIKGLSEDEAVALMSAAVDFGVTQVVDGNWGVHAILS
KRLFEDAD

Sequences:

>Translated_808_residues
MRRTLSITGPRPTVELIWHGGCFDVPNPGRAMSFRPFTSESYAQGERPEAWRDVLNAAGLQPAAKSPFDDGHATASHRSA
PGIALSRLSAGAQAVAAVPQVQEDLPIALLAIEDGAVLRCGDTHRIIPSGHLILLPRTADWSLAFQRDLRAIVLSVTSAA
LHGRISGKLKFARPQVIAPSGLADVVCRTIEATARTLDMLSEAEWSTVAQSLVDLLLTLAHQQAVPTSETGSSATQAAIL
HRICQAIERELDDAELTPTRVAQAEGISERYLQKLFEGAGDNFTHYVKERRLQRAWTDLSNPAEAHHSISEIAYRYGFAD
SAHFSRSFRARFGLSPREFRQQKAEQAVTSAAPRGQRGWPQDALAQQRGCQTQASLKSSTALPAPANDQDARQRHHHLAV
SAERVHWGYFSRSLPPQLEIASGDTITVETLTQHASDDPELMIAGDDGALSVFGWSKTRKNVDRRGAGPMDASVFGRGAG
EGFGVHICTGPVAIKDAQPGDVLEVRILDIVPRLSRSPKHRGRVFGSSVAAWWGYHYNELIAAPAPREAVTIYEIFAGDP
EPHARALYSYRWEPQTDPAGVVHATYDYPGVPVAPGSIKRRHGVLDNIRIPLRPHFGVIAVAPREVDFVDSIPPSYFGGN
LDNWRLGKGSTVYLPVAVPGALLSVGDPHATQGDGELGGTAIECSMTGTFQVILHKKTQLAGKPFADLTYPLIETETDWV
LTGFSHPNYLAEFGAQGQSEVYAKSSLDLAMKDAFRKMRRFLMHIKGLSEDEAVALMSAAVDFGVTQVVDGNWGVHAILS
KRLFEDAD
>Mature_808_residues
MRRTLSITGPRPTVELIWHGGCFDVPNPGRAMSFRPFTSESYAQGERPEAWRDVLNAAGLQPAAKSPFDDGHATASHRSA
PGIALSRLSAGAQAVAAVPQVQEDLPIALLAIEDGAVLRCGDTHRIIPSGHLILLPRTADWSLAFQRDLRAIVLSVTSAA
LHGRISGKLKFARPQVIAPSGLADVVCRTIEATARTLDMLSEAEWSTVAQSLVDLLLTLAHQQAVPTSETGSSATQAAIL
HRICQAIERELDDAELTPTRVAQAEGISERYLQKLFEGAGDNFTHYVKERRLQRAWTDLSNPAEAHHSISEIAYRYGFAD
SAHFSRSFRARFGLSPREFRQQKAEQAVTSAAPRGQRGWPQDALAQQRGCQTQASLKSSTALPAPANDQDARQRHHHLAV
SAERVHWGYFSRSLPPQLEIASGDTITVETLTQHASDDPELMIAGDDGALSVFGWSKTRKNVDRRGAGPMDASVFGRGAG
EGFGVHICTGPVAIKDAQPGDVLEVRILDIVPRLSRSPKHRGRVFGSSVAAWWGYHYNELIAAPAPREAVTIYEIFAGDP
EPHARALYSYRWEPQTDPAGVVHATYDYPGVPVAPGSIKRRHGVLDNIRIPLRPHFGVIAVAPREVDFVDSIPPSYFGGN
LDNWRLGKGSTVYLPVAVPGALLSVGDPHATQGDGELGGTAIECSMTGTFQVILHKKTQLAGKPFADLTYPLIETETDWV
LTGFSHPNYLAEFGAQGQSEVYAKSSLDLAMKDAFRKMRRFLMHIKGLSEDEAVALMSAAVDFGVTQVVDGNWGVHAILS
KRLFEDAD

Specific function: Transcriptional activator of the rhizobactin regulon [H]

COG id: COG2421

COG function: function code C; Predicted acetamidase/formamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787649, Length=145, Percent_Identity=28.9655172413793, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 87825; Mature: 87825

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLSITGPRPTVELIWHGGCFDVPNPGRAMSFRPFTSESYAQGERPEAWRDVLNAAGL
CCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHCCCCCCHHHHHHHHHCCC
QPAAKSPFDDGHATASHRSAPGIALSRLSAGAQAVAAVPQVQEDLPIALLAIEDGAVLRC
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEE
GDTHRIIPSGHLILLPRTADWSLAFQRDLRAIVLSVTSAALHGRISGKLKFARPQVIAPS
CCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCC
GLADVVCRTIEATARTLDMLSEAEWSTVAQSLVDLLLTLAHQQAVPTSETGSSATQAAIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HRICQAIERELDDAELTPTRVAQAEGISERYLQKLFEGAGDNFTHYVKERRLQRAWTDLS
HHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
NPAEAHHSISEIAYRYGFADSAHFSRSFRARFGLSPREFRQQKAEQAVTSAAPRGQRGWP
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
QDALAQQRGCQTQASLKSSTALPAPANDQDARQRHHHLAVSAERVHWGYFSRSLPPQLEI
HHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEECEEEEEHHCCCCCCCEEE
ASGDTITVETLTQHASDDPELMIAGDDGALSVFGWSKTRKNVDRRGAGPMDASVFGRGAG
CCCCEEEEEEHHHCCCCCCCEEEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHCCCCC
EGFGVHICTGPVAIKDAQPGDVLEVRILDIVPRLSRSPKHRGRVFGSSVAAWWGYHYNEL
CCCEEEEEECCEEEECCCCCCEEEEEHHHHHHHHCCCCCHHCCHHHCHHHHHHCCCHHHH
IAAPAPREAVTIYEIFAGDPEPHARALYSYRWEPQTDPAGVVHATYDYPGVPVAPGSIKR
CCCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCCCCCCCEEEEECCCCCCCCCCCCHHH
RHGVLDNIRIPLRPHFGVIAVAPREVDFVDSIPPSYFGGNLDNWRLGKGSTVYLPVAVPG
HCCCHHCCEECCCCCCCEEEECCCCCCHHHCCCCHHCCCCCCCEECCCCCEEEEEEECCC
ALLSVGDPHATQGDGELGGTAIECSMTGTFQVILHKKTQLAGKPFADLTYPLIETETDWV
HHEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEEHHHHHCCCCHHHCCCCEEECCCCEE
LTGFSHPNYLAEFGAQGQSEVYAKSSLDLAMKDAFRKMRRFLMHIKGLSEDEAVALMSAA
EECCCCCHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VDFGVTQVVDGNWGVHAILSKRLFEDAD
HHCCCEEEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRTLSITGPRPTVELIWHGGCFDVPNPGRAMSFRPFTSESYAQGERPEAWRDVLNAAGL
CCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHCCCCCCHHHHHHHHHCCC
QPAAKSPFDDGHATASHRSAPGIALSRLSAGAQAVAAVPQVQEDLPIALLAIEDGAVLRC
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEE
GDTHRIIPSGHLILLPRTADWSLAFQRDLRAIVLSVTSAALHGRISGKLKFARPQVIAPS
CCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCC
GLADVVCRTIEATARTLDMLSEAEWSTVAQSLVDLLLTLAHQQAVPTSETGSSATQAAIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HRICQAIERELDDAELTPTRVAQAEGISERYLQKLFEGAGDNFTHYVKERRLQRAWTDLS
HHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
NPAEAHHSISEIAYRYGFADSAHFSRSFRARFGLSPREFRQQKAEQAVTSAAPRGQRGWP
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
QDALAQQRGCQTQASLKSSTALPAPANDQDARQRHHHLAVSAERVHWGYFSRSLPPQLEI
HHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHEEEECEEEEEHHCCCCCCCEEE
ASGDTITVETLTQHASDDPELMIAGDDGALSVFGWSKTRKNVDRRGAGPMDASVFGRGAG
CCCCEEEEEEHHHCCCCCCCEEEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHCCCCC
EGFGVHICTGPVAIKDAQPGDVLEVRILDIVPRLSRSPKHRGRVFGSSVAAWWGYHYNEL
CCCEEEEEECCEEEECCCCCCEEEEEHHHHHHHHCCCCCHHCCHHHCHHHHHHCCCHHHH
IAAPAPREAVTIYEIFAGDPEPHARALYSYRWEPQTDPAGVVHATYDYPGVPVAPGSIKR
CCCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCCCCCCCEEEEECCCCCCCCCCCCHHH
RHGVLDNIRIPLRPHFGVIAVAPREVDFVDSIPPSYFGGNLDNWRLGKGSTVYLPVAVPG
HCCCHHCCEECCCCCCCEEEECCCCCCHHHCCCCHHCCCCCCCEECCCCCEEEEEEECCC
ALLSVGDPHATQGDGELGGTAIECSMTGTFQVILHKKTQLAGKPFADLTYPLIETETDWV
HHEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEEHHHHHCCCCHHHCCCCEEECCCCEE
LTGFSHPNYLAEFGAQGQSEVYAKSSLDLAMKDAFRKMRRFLMHIKGLSEDEAVALMSAA
EECCCCCHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VDFGVTQVVDGNWGVHAILSKRLFEDAD
HHCCCEEEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11274118; 11481432 [H]