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The map label for this gene is tdcF [C]

Identifier: 146338607

GI number: 146338607

Start: 1640202

End: 1640585

Strand: Reverse

Name: tdcF [C]

Synonym: BRADO1535

Alternate gene names: 146338607

Gene position: 1640585-1640202 (Counterclockwise)

Preceding gene: 146338608

Following gene: 146338606

Centisome position: 22.0

GC content: 60.42

Gene sequence:

>384_bases
ATGCAGTTCCACATGATCCCTGGCGCCACAAAGCCCGTGGCGCCGTTCAGCCATGCCGTGGAGACCGACGGTTTCGTGTT
CGTCACCGGACAGATGCCGGACTCACCGGAGGCGAAGGGTGTGCTGCCGGAGGGGATCGTGGATCAGACGAAGGCGGTGA
TGCAGAACTTGAAGTACATCCTCCAAGGTCTCAACCTCGGCCTCGAACACATTGTGATGTCTCGGATTTACCTGACCGAG
TTCAAGCGCGATTACGCGGCAATGAATGAAACCTACCGTTCATTCTTCCCCGCGGATCGGCTGCCGGCCCGCACCTGCGT
CGGCGTCACCGGCCTCGCCTATGACGCGCTGATCGAGATCGATCTGGTCTGCCGACGACCCTAG

Upstream 100 bases:

>100_bases
TTGTCCCGCGCCGTGCCCACCGCCGCTCAGATGGTGGGCACGCGTCGCCTGCGGCGCCGCTTTGCCCACCCTACTCATTC
ACTGAAAGAAAGGACCCTTC

Downstream 100 bases:

>100_bases
TTCCAAATGGTAAATTAATCCTCAATGCTTTCGAGGGCCTTCGATCTGAGCTGAGGAGGCAGGCGCCGTTGCCGATTGTG
CGGCGGCGCCGGCCGGTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MQFHMIPGATKPVAPFSHAVETDGFVFVTGQMPDSPEAKGVLPEGIVDQTKAVMQNLKYILQGLNLGLEHIVMSRIYLTE
FKRDYAAMNETYRSFFPADRLPARTCVGVTGLAYDALIEIDLVCRRP

Sequences:

>Translated_127_residues
MQFHMIPGATKPVAPFSHAVETDGFVFVTGQMPDSPEAKGVLPEGIVDQTKAVMQNLKYILQGLNLGLEHIVMSRIYLTE
FKRDYAAMNETYRSFFPADRLPARTCVGVTGLAYDALIEIDLVCRRP
>Mature_127_residues
MQFHMIPGATKPVAPFSHAVETDGFVFVTGQMPDSPEAKGVLPEGIVDQTKAVMQNLKYILQGLNLGLEHIVMSRIYLTE
FKRDYAAMNETYRSFFPADRLPARTCVGVTGLAYDALIEIDLVCRRP

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082213, Length=122, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=9e-14,
Organism=Escherichia coli, GI1787245, Length=117, Percent_Identity=31.6239316239316, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI87082396, Length=116, Percent_Identity=29.3103448275862, Blast_Score=65, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=111, Percent_Identity=34.2342342342342, Blast_Score=71, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=94, Percent_Identity=34.0425531914894, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19921376, Length=116, Percent_Identity=32.7586206896552, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14150; Mature: 14150

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFHMIPGATKPVAPFSHAVETDGFVFVTGQMPDSPEAKGVLPEGIVDQTKAVMQNLKYI
CEEECCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQGLNLGLEHIVMSRIYLTEFKRDYAAMNETYRSFFPADRLPARTCVGVTGLAYDALIEI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHE
DLVCRRP
EEEECCC
>Mature Secondary Structure
MQFHMIPGATKPVAPFSHAVETDGFVFVTGQMPDSPEAKGVLPEGIVDQTKAVMQNLKYI
CEEECCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQGLNLGLEHIVMSRIYLTEFKRDYAAMNETYRSFFPADRLPARTCVGVTGLAYDALIEI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHE
DLVCRRP
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]