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The map label for this gene is agmR [H]

Identifier: 146338539

GI number: 146338539

Start: 1563439

End: 1564320

Strand: Reverse

Name: agmR [H]

Synonym: BRADO1459

Alternate gene names: 146338539

Gene position: 1564320-1563439 (Counterclockwise)

Preceding gene: 146338540

Following gene: 146338536

Centisome position: 20.98

GC content: 63.61

Gene sequence:

>882_bases
TTGATTGCTCCACAGCAAAGCGCTATCGCTGGCGGGTTGGCTCTGCCGTTCGATCGAAGACGATGCGCAGACATCGCAGC
GAATGTCAGTCCGCGACTTGCAACCTGGATCTCGATCCAGCCCGGGGGGAGTGGCAGGCACGTGGCTCGATTGCTGATCA
TCGAGGACCATCCGCTGTTTCGCGAGGCGCTGGAGAATGCGATCAGCGCAGCGCTGCCCGATGCCGAGATGCTCCAAGCG
ACGTCCATCGACACGGCCATCGGTCTTCTGTCGCCGCCACCAGGGGTCGACCTGATCCTGCTCGACCTCTCGACGCCCGG
CACCACCGGCCTCTCTGGCGTCATTCGCTTGCGCAAATCAGCGCCAAGGACACCGATCCTCGTGGTGTCGGCGCACCAAG
ACCCGCGGCTGGTCGCTTATGTGCTATCCTTGGGGGTAGCCGGCTACGTCTCGAAGTCGTCCACCAAAGAGCAACTGGCC
CACGCGATCAACAGCGTGCTGCGCGGTGACGTCCATGTTCCGGGCAGCGCACGCTCGGCCGAGGCGCGACGGACCAGGCT
CCCCGCGCAGGATCTGCTGAAACGACTTCACGACCTGACACCTCAGCAGTTGCGCGTGCTCGACCAGATTCGGTGCGGGC
TGCAGAACAAGCAGATCGCCTATGAGCTCGGGATCTGCGAGACCACGGTGAAGGTCCATGTCTCGGATATCCTGCGAAAG
CTCCAGGTCACGAGCCGGACCCAGGCCATCATCGAAATGGAGAAGCTCGACTTCGTGAACCTGATCGGCGAAGCGCGCGG
TCCGGCCGATGCGCCGAGAGACGGCGCCGCTCCGCTCACGTCAACAGGAACGACAACAGTGCGCGAAGCTCCGCCGGCCT
GA

Upstream 100 bases:

>100_bases
CCCGCGCCGCGCAGAAAGCAGCAATAGCCAACGCGTATTTGCTGCAACGCGAGAAGCGACAAGCCTGGCGGTCATCGCAG
CGGCGCCCGCGTCGTGATCG

Downstream 100 bases:

>100_bases
CAGGCTTGGTCAGGATCTCGAGCCCGAAAAGGCTTGCTTCCTTCGCGGCGGCCTCCGAATAGTCAGCGGTGACGATCATG
GCCGGCACATCGCTGCCGAT

Product: two-component LuxR family transcriptional regulator (modular protein)

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MIAPQQSAIAGGLALPFDRRRCADIAANVSPRLATWISIQPGGSGRHVARLLIIEDHPLFREALENAISAALPDAEMLQA
TSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKSAPRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLA
HAINSVLRGDVHVPGSARSAEARRTRLPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRK
LQVTSRTQAIIEMEKLDFVNLIGEARGPADAPRDGAAPLTSTGTTTVREAPPA

Sequences:

>Translated_293_residues
MIAPQQSAIAGGLALPFDRRRCADIAANVSPRLATWISIQPGGSGRHVARLLIIEDHPLFREALENAISAALPDAEMLQA
TSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKSAPRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLA
HAINSVLRGDVHVPGSARSAEARRTRLPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRK
LQVTSRTQAIIEMEKLDFVNLIGEARGPADAPRDGAAPLTSTGTTTVREAPPA
>Mature_293_residues
MIAPQQSAIAGGLALPFDRRRCADIAANVSPRLATWISIQPGGSGRHVARLLIIEDHPLFREALENAISAALPDAEMLQA
TSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKSAPRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLA
HAINSVLRGDVHVPGSARSAEARRTRLPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRK
LQVTSRTQAIIEMEKLDFVNLIGEARGPADAPRDGAAPLTSTGTTTVREAPPA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=211, Percent_Identity=32.7014218009479, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=25.5, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787473, Length=209, Percent_Identity=33.0143540669856, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=24.5, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788712, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790102, Length=199, Percent_Identity=27.1356783919598, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788222, Length=193, Percent_Identity=22.7979274611399, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 31292; Mature: 31292

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPQQSAIAGGLALPFDRRRCADIAANVSPRLATWISIQPGGSGRHVARLLIIEDHPLF
CCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHH
REALENAISAALPDAEMLQATSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHC
APRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLAHAINSVLRGDVHVPGSARSA
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH
EARRTRLPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRK
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHH
LQVTSRTQAIIEMEKLDFVNLIGEARGPADAPRDGAAPLTSTGTTTVREAPPA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIAPQQSAIAGGLALPFDRRRCADIAANVSPRLATWISIQPGGSGRHVARLLIIEDHPLF
CCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHH
REALENAISAALPDAEMLQATSIDTAIGLLSPPPGVDLILLDLSTPGTTGLSGVIRLRKS
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHC
APRTPILVVSAHQDPRLVAYVLSLGVAGYVSKSSTKEQLAHAINSVLRGDVHVPGSARSA
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH
EARRTRLPAQDLLKRLHDLTPQQLRVLDQIRCGLQNKQIAYELGICETTVKVHVSDILRK
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHH
LQVTSRTQAIIEMEKLDFVNLIGEARGPADAPRDGAAPLTSTGTTTVREAPPA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]