Click here to switch to the map view.

The map label for this gene is agmR [H]

Identifier: 146338540

GI number: 146338540

Start: 1564394

End: 1565155

Strand: Reverse

Name: agmR [H]

Synonym: BRADO1460

Alternate gene names: 146338540

Gene position: 1565155-1564394 (Counterclockwise)

Preceding gene: 146338541

Following gene: 146338539

Centisome position: 20.99

GC content: 65.88

Gene sequence:

>762_bases
TTGAGGAGCGCAGGCGGACCGCACGATCTGGCGGGACGGCCGGAGCGCGCGGGTGACAATCGAGAGCCGGACATGACGTG
CTTCCTGATCATCGACGATCATCCGCTGTTTCGCGAGGCGCTCGGCAACGCCGTGCGGTTGGCGCATCCGGACGCGCAGA
TCTTCGACGCGCTGTCGATTGCCGATGCGCTCAACATTCTCGCGGCGCAATCCGAGATCGATCTGGCGCTCCTGGACCTG
ACGCTCCCCGATGCCACCGGTTTCTCTGGATTCCTCCGGCTTCGCGCCGCGCATCCGCGGTTGCCGGTTGCGATCGTGTC
GAGTGAGGAAGACCAGCATGTGGTGCGCGAAGCGCTCGCGCTGGGCGCTGCAGGCTACCTGCCGAAGTCGACCTCGAAAC
GCGAGCTGACGGCCGCGATCGAACGCGTGCTCAGCGGCTCGATCTCCGTGCCCAAGGATTTGCTCCCTGCAGCCGATCGC
GACGGCAACGGGTCGTCTCGCGCGCTGCAGGATCGCGTGGCGCAGCTGACACCGCAGCAGCTCCGCGTGCTCGACCTGAT
CAGGCGCGGTTATCAGAACCGGGACATTGCCGCCGAGCTGCAGCTCGCGGAATCGACCGTCAAGGCGCATATCACCGAGG
TGCTGAGAAAGCTCCGGCTGTTCAGCCGCAACAAGGCCGTCATCGAAACCGGCAAGATCGAGCTGCCCCTGCCGAGCGAC
CGTCAGAGCTCGCGACCCGCGCCGCGCAGAAAGCAGCAATAG

Upstream 100 bases:

>100_bases
CCTCCAAGGGCATGCCGGCCTGGAAGGAGGTCTTTACCGACGACCAGTTCGAGAGCATCTATGCGTTCCTGCTGACCGTG
CAGTCCTCAGAAACGGCGAA

Downstream 100 bases:

>100_bases
CCAACGCGTATTTGCTGCAACGCGAGAAGCGACAAGCCTGGCGGTCATCGCAGCGGCGCCCGCGTCGTGATCGTTGATTG
CTCCACAGCAAAGCGCTATC

Product: two-component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRSAGGPHDLAGRPERAGDNREPDMTCFLIIDDHPLFREALGNAVRLAHPDAQIFDALSIADALNILAAQSEIDLALLDL
TLPDATGFSGFLRLRAAHPRLPVAIVSSEEDQHVVREALALGAAGYLPKSTSKRELTAAIERVLSGSISVPKDLLPAADR
DGNGSSRALQDRVAQLTPQQLRVLDLIRRGYQNRDIAAELQLAESTVKAHITEVLRKLRLFSRNKAVIETGKIELPLPSD
RQSSRPAPRRKQQ

Sequences:

>Translated_253_residues
MRSAGGPHDLAGRPERAGDNREPDMTCFLIIDDHPLFREALGNAVRLAHPDAQIFDALSIADALNILAAQSEIDLALLDL
TLPDATGFSGFLRLRAAHPRLPVAIVSSEEDQHVVREALALGAAGYLPKSTSKRELTAAIERVLSGSISVPKDLLPAADR
DGNGSSRALQDRVAQLTPQQLRVLDLIRRGYQNRDIAAELQLAESTVKAHITEVLRKLRLFSRNKAVIETGKIELPLPSD
RQSSRPAPRRKQQ
>Mature_253_residues
MRSAGGPHDLAGRPERAGDNREPDMTCFLIIDDHPLFREALGNAVRLAHPDAQIFDALSIADALNILAAQSEIDLALLDL
TLPDATGFSGFLRLRAAHPRLPVAIVSSEEDQHVVREALALGAAGYLPKSTSKRELTAAIERVLSGSISVPKDLLPAADR
DGNGSSRALQDRVAQLTPQQLRVLDLIRRGYQNRDIAAELQLAESTVKAHITEVLRKLRLFSRNKAVIETGKIELPLPSD
RQSSRPAPRRKQQ

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=214, Percent_Identity=35.5140186915888, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=31.1004784688995, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=24.6231155778894, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27629; Mature: 27629

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAGGPHDLAGRPERAGDNREPDMTCFLIIDDHPLFREALGNAVRLAHPDAQIFDALSI
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCEEEECCCCHHHHHHHHH
ADALNILAAQSEIDLALLDLTLPDATGFSGFLRLRAAHPRLPVAIVSSEEDQHVVREALA
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
LGAAGYLPKSTSKRELTAAIERVLSGSISVPKDLLPAADRDGNGSSRALQDRVAQLTPQQ
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCHHH
LRVLDLIRRGYQNRDIAAELQLAESTVKAHITEVLRKLRLFSRNKAVIETGKIELPLPSD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCC
RQSSRPAPRRKQQ
CCCCCCCCCCCCC
>Mature Secondary Structure
MRSAGGPHDLAGRPERAGDNREPDMTCFLIIDDHPLFREALGNAVRLAHPDAQIFDALSI
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCEEEECCCCHHHHHHHHH
ADALNILAAQSEIDLALLDLTLPDATGFSGFLRLRAAHPRLPVAIVSSEEDQHVVREALA
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
LGAAGYLPKSTSKRELTAAIERVLSGSISVPKDLLPAADRDGNGSSRALQDRVAQLTPQQ
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCHHH
LRVLDLIRRGYQNRDIAAELQLAESTVKAHITEVLRKLRLFSRNKAVIETGKIELPLPSD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCC
RQSSRPAPRRKQQ
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]