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The map label for this gene is yciR [C]

Identifier: 146338485

GI number: 146338485

Start: 1499925

End: 1501079

Strand: Reverse

Name: yciR [C]

Synonym: BRADO1402

Alternate gene names: 146338485

Gene position: 1501079-1499925 (Counterclockwise)

Preceding gene: 146338486

Following gene: 146338482

Centisome position: 20.13

GC content: 67.53

Gene sequence:

>1155_bases
GTGTTCCATGGTGGGGCCATGGGACATGGGCAGCTGGCGAAATTCATCCATCCGAACCCGGCGATCCGGCGCGAGTTGGT
CGACCTGCTCTATACGTCCCTGCCGCAGGTCATGTCGATCAATGCCGCAGCTATCACCGGTTCGGTGACGCTCGCGATCC
TGCATCGCGATCCCGGCTACATCGCCATCGCATGCGCGATCTTCATCAACGCGGTGGGTCGCGTGGTGAGTCTGCTCCGC
TACAAGCAACATGCCGCGCGCCTCTCCGATCAAGACGTGATCCTCTGGGAAAAGATCTATGCGGCCGGCGCGACCGCGTT
CGGCCTTGCGCTCGGCGCCCTCACCTTCCGCGCGTTTCAGCTCGACGATGCACCCGGCGCCTGGATCGGATTCGGCCTGT
CGATGTCCTATTGCGTCGGTATGGTGTCGCGCGCGGCGATCCGGCCGTGGGTGGTGCTGATGGCGACCGCGGTGCTGTTC
GCCCCCACCCTGGTCGCTGGCCTGATGCGCCCGGAATTGCCTTACCAGCTCGGTGCCGCGATGCTGGTGCTGTTCTGGTT
CTCGATCCGCGAGGCGTCGCGCCATCTCAGCACCGCCTTCATCGAGCGGCTCGAGGCCAAGCATGCGCTGGCGCGCCAGG
CCAACCACGATTTCCTCACCGGACTGCCGAATCGCGCGGCGTTTCTGGCCGCGCTCGAAGGCGCGGTCGGCAGCACCGCC
ATCGTCGCCATCGATCTCGACGGCTTCAAGCCGGTCAATGACCGTCACGGGCATCATGCGGGAGACGACTTACTGCGTCA
GGTCGCCAACCGCCTGTCGACCTGCGTCGGATCGGACGGGCTCGCGGCGCGTTTCGGCGGCGACGAGTTCATGCTGCTGA
AGCCGGTGGCGAGTGGCGCGCGGGCGCGCGACGACGCCTTGCGGCTGGCGCGCGAGGCCGTGCGCGCGCTGGCGATGCCG
TTCCTGCTGTCGGACATCCCCGTCATCATCGGCGCCAGCGCCGGCCTGCTCGTCAATGATGGTGCGCTCACGGACGAGGC
GGTGGACGATCTGCTGCGCCAGGTTGACAGCGCGCTCTACGCGGCCAAGCGTGCAGGGGGCGGCGGCTGCACCTGGGTCG
ACGCCGAGAGCGGCGCCTTGCGGCAGGCGAGCTGA

Upstream 100 bases:

>100_bases
ACGAACGATCCCAGCCGCGTGCCGAGCAATTGACGAAGCCTTAAGCTAATCGCGAAGCTCCGCTGCGCGATCGGGCCTTG
CCCATCACCTGTTAGGAAAG

Downstream 100 bases:

>100_bases
GCCGCGCTTCGTCTCAGTCGATGATCACGCCGCGCAGCAGCGCGTCGATCTGATCCGCATCGAGCTCTCCCTCGCGCCCG
ATCAGGACGAGCTGCGCGGT

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MFHGGAMGHGQLAKFIHPNPAIRRELVDLLYTSLPQVMSINAAAITGSVTLAILHRDPGYIAIACAIFINAVGRVVSLLR
YKQHAARLSDQDVILWEKIYAAGATAFGLALGALTFRAFQLDDAPGAWIGFGLSMSYCVGMVSRAAIRPWVVLMATAVLF
APTLVAGLMRPELPYQLGAAMLVLFWFSIREASRHLSTAFIERLEAKHALARQANHDFLTGLPNRAAFLAALEGAVGSTA
IVAIDLDGFKPVNDRHGHHAGDDLLRQVANRLSTCVGSDGLAARFGGDEFMLLKPVASGARARDDALRLAREAVRALAMP
FLLSDIPVIIGASAGLLVNDGALTDEAVDDLLRQVDSALYAAKRAGGGGCTWVDAESGALRQAS

Sequences:

>Translated_384_residues
MFHGGAMGHGQLAKFIHPNPAIRRELVDLLYTSLPQVMSINAAAITGSVTLAILHRDPGYIAIACAIFINAVGRVVSLLR
YKQHAARLSDQDVILWEKIYAAGATAFGLALGALTFRAFQLDDAPGAWIGFGLSMSYCVGMVSRAAIRPWVVLMATAVLF
APTLVAGLMRPELPYQLGAAMLVLFWFSIREASRHLSTAFIERLEAKHALARQANHDFLTGLPNRAAFLAALEGAVGSTA
IVAIDLDGFKPVNDRHGHHAGDDLLRQVANRLSTCVGSDGLAARFGGDEFMLLKPVASGARARDDALRLAREAVRALAMP
FLLSDIPVIIGASAGLLVNDGALTDEAVDDLLRQVDSALYAAKRAGGGGCTWVDAESGALRQAS
>Mature_384_residues
MFHGGAMGHGQLAKFIHPNPAIRRELVDLLYTSLPQVMSINAAAITGSVTLAILHRDPGYIAIACAIFINAVGRVVSLLR
YKQHAARLSDQDVILWEKIYAAGATAFGLALGALTFRAFQLDDAPGAWIGFGLSMSYCVGMVSRAAIRPWVVLMATAVLF
APTLVAGLMRPELPYQLGAAMLVLFWFSIREASRHLSTAFIERLEAKHALARQANHDFLTGLPNRAAFLAALEGAVGSTA
IVAIDLDGFKPVNDRHGHHAGDDLLRQVANRLSTCVGSDGLAARFGGDEFMLLKPVASGARARDDALRLAREAVRALAMP
FLLSDIPVIIGASAGLLVNDGALTDEAVDDLLRQVDSALYAAKRAGGGGCTWVDAESGALRQAS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=35.0282485875706, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=39.8876404494382, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.2093023255814, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=36, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=33.6633663366337, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=33.9622641509434, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=34.8837209302326, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=27.7456647398844, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693134, Length=201, Percent_Identity=28.8557213930348, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 40805; Mature: 40805

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHGGAMGHGQLAKFIHPNPAIRRELVDLLYTSLPQVMSINAAAITGSVTLAILHRDPGY
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHCCCHHEEECCEEEEEEECCCCH
IAIACAIFINAVGRVVSLLRYKQHAARLSDQDVILWEKIYAAGATAFGLALGALTFRAFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
LDDAPGAWIGFGLSMSYCVGMVSRAAIRPWVVLMATAVLFAPTLVAGLMRPELPYQLGAA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MLVLFWFSIREASRHLSTAFIERLEAKHALARQANHDFLTGLPNRAAFLAALEGAVGSTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCCEE
IVAIDLDGFKPVNDRHGHHAGDDLLRQVANRLSTCVGSDGLAARFGGDEFMLLKPVASGA
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHCCC
RARDDALRLAREAVRALAMPFLLSDIPVIIGASAGLLVNDGALTDEAVDDLLRQVDSALY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH
AAKRAGGGGCTWVDAESGALRQAS
HHHHCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MFHGGAMGHGQLAKFIHPNPAIRRELVDLLYTSLPQVMSINAAAITGSVTLAILHRDPGY
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHCCCHHEEECCEEEEEEECCCCH
IAIACAIFINAVGRVVSLLRYKQHAARLSDQDVILWEKIYAAGATAFGLALGALTFRAFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
LDDAPGAWIGFGLSMSYCVGMVSRAAIRPWVVLMATAVLFAPTLVAGLMRPELPYQLGAA
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MLVLFWFSIREASRHLSTAFIERLEAKHALARQANHDFLTGLPNRAAFLAALEGAVGSTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCCEE
IVAIDLDGFKPVNDRHGHHAGDDLLRQVANRLSTCVGSDGLAARFGGDEFMLLKPVASGA
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHCCC
RARDDALRLAREAVRALAMPFLLSDIPVIIGASAGLLVNDGALTDEAVDDLLRQVDSALY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH
AAKRAGGGGCTWVDAESGALRQAS
HHHHCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]