| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146337837
Identifier: 146337837
GI number: 146337837
Start: 756035
End: 756838
Strand: Reverse
Name: 146337837
Synonym: BRADO0718
Alternate gene names: NA
Gene position: 756838-756035 (Counterclockwise)
Preceding gene: 146337838
Following gene: 146337834
Centisome position: 10.15
GC content: 67.29
Gene sequence:
>804_bases GTGACGATTGCAACACGCCGTGGCGTTCTCGGCCTGCTCTCCGCGAGCGCGGCGCTGCTGTCACCATCGGCACGCGCGGC GTCGGAAACGCCCGCTCCGGCCGCTGGCGCAGAAGATGCCTGCATCCTCACGCCGCAGTCCGAATCCGGTCCCTATTATC TCGACCCCAAGCTCGTGCGCGCTGATATCACCGAGGGCCGCCCCGGCGTGCCGCTCGGCTTGCGCCTGCGCGTGATCGAG GCCGGCGCCTGTACGCCGATCTCTGGCGCGCGGGTCGACATCTGGCATTGTGACGCGCGTGGCGTCTATTCCGGCTATCC GGGCCAGGGCGATAATCACAAGCTCGACCAGAGCGGCAAGACCTATCTGCGCGGCACGCAGATGGCGGATGCCGCGGGAT GGGCGGGCTTCAACACCATCTATCCAGGCTGGTATGCCGGCCGCGCCACCCACATTCATTTCAGAGTGTTCGTCGACGAC GCCACCGTGCTGACGGGACAGACCTTCTTCCCTGAGGCGCTCAACGAGTTCATCTACACCAGCGTCCCGGACTACACGGG ACGGCCGAAGCAGCGGCTGGTGATCAACGCCAATGACCGCGTCGCCACCGATGCCGATCCCGATCATCGCGCCTACTGCG CTATCAAGGAGGAGCGTGACCGTTATCTCGCGACGCTCACCCTGGCGGTGCGCCGCGAGGCGGCGAAGCCGGTCGAGATG CCCACCGGCAGGCTGCCGCCGGCGCCCTGGATCAAGGACCGCTTGGCGGCGCTGGTGCCCGGGCTGAAGCGCAGCCCGTT CTGA
Upstream 100 bases:
>100_bases GGTGTGAGCGCGTGCAGCGCCGCGCGGCCGCACGGCGTCCGATTGTTGCCATTCGCGGCTGCTCGACTGCCTCCATCGCG CATGATCGCTGGAGGCTTCC
Downstream 100 bases:
>100_bases TCAGTCGCGCTCGGTGAACTGATAGGCCAGGGCGGCGAGCGGCAGCGCGGTGCCGAGCGCGGCGGCGAGCGTCCAGCCGC CATGCGCGTAGACATAGGCG
Product: putative intradiol ring-cleavage dioxygenase
Products: NA
Alternate protein names: Protocatechuate Dioxygenase; Dioxygenase; Twin-Arginine Translocation Pathway Signal; Protocatechuate 3 4-Dioxygenase Beta Chain; Protocatechuate 3 4-Dioxygenase; Dioxygenase Subfamily Protein; Protocatechuate 3 4-Dioxygenase Beta Subunit Like Protein; Protocatechuate 3,4-Dioxygenase Protein Beta Chain; Intradiol-Dioxygenase-Like Protein; Protocatechuate 3 4-Dioxygenase Beta Subunit; Protocatechuate 3 4-Dioxygenase Subunit Beta-Like Protein; Protocatechuate 3 4-Dioxygenase Subunit Beta; Catechol 1 2-Dioxygenase; Ring-Cleaving Dioxygenase Protein; Intradiol Dioxygenase
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTIATRRGVLGLLSASAALLSPSARAASETPAPAAGAEDACILTPQSESGPYYLDPKLVRADITEGRPGVPLGLRLRVIE AGACTPISGARVDIWHCDARGVYSGYPGQGDNHKLDQSGKTYLRGTQMADAAGWAGFNTIYPGWYAGRATHIHFRVFVDD ATVLTGQTFFPEALNEFIYTSVPDYTGRPKQRLVINANDRVATDADPDHRAYCAIKEERDRYLATLTLAVRREAAKPVEM PTGRLPPAPWIKDRLAALVPGLKRSPF
Sequences:
>Translated_267_residues MTIATRRGVLGLLSASAALLSPSARAASETPAPAAGAEDACILTPQSESGPYYLDPKLVRADITEGRPGVPLGLRLRVIE AGACTPISGARVDIWHCDARGVYSGYPGQGDNHKLDQSGKTYLRGTQMADAAGWAGFNTIYPGWYAGRATHIHFRVFVDD ATVLTGQTFFPEALNEFIYTSVPDYTGRPKQRLVINANDRVATDADPDHRAYCAIKEERDRYLATLTLAVRREAAKPVEM PTGRLPPAPWIKDRLAALVPGLKRSPF >Mature_266_residues TIATRRGVLGLLSASAALLSPSARAASETPAPAAGAEDACILTPQSESGPYYLDPKLVRADITEGRPGVPLGLRLRVIEA GACTPISGARVDIWHCDARGVYSGYPGQGDNHKLDQSGKTYLRGTQMADAAGWAGFNTIYPGWYAGRATHIHFRVFVDDA TVLTGQTFFPEALNEFIYTSVPDYTGRPKQRLVINANDRVATDADPDHRAYCAIKEERDRYLATLTLAVRREAAKPVEMP TGRLPPAPWIKDRLAALVPGLKRSPF
Specific function: Unknown
COG id: COG3485
COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28906; Mature: 28775
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIATRRGVLGLLSASAALLSPSARAASETPAPAAGAEDACILTPQSESGPYYLDPKLVR CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEE ADITEGRPGVPLGLRLRVIEAGACTPISGARVDIWHCDARGVYSGYPGQGDNHKLDQSGK EECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC TYLRGTQMADAAGWAGFNTIYPGWYAGRATHIHFRVFVDDATVLTGQTFFPEALNEFIYT EEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEECCCCCHHHHHHHEEC SVPDYTGRPKQRLVINANDRVATDADPDHRAYCAIKEERDRYLATLTLAVRREAAKPVEM CCCCCCCCCCEEEEEECCCCEECCCCCCCCEEEEEEHHCCCEEEEHHHHHHHHCCCCCCC PTGRLPPAPWIKDRLAALVPGLKRSPF CCCCCCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TIATRRGVLGLLSASAALLSPSARAASETPAPAAGAEDACILTPQSESGPYYLDPKLVR CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEE ADITEGRPGVPLGLRLRVIEAGACTPISGARVDIWHCDARGVYSGYPGQGDNHKLDQSGK EECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC TYLRGTQMADAAGWAGFNTIYPGWYAGRATHIHFRVFVDDATVLTGQTFFPEALNEFIYT EEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEECCCCCHHHHHHHEEC SVPDYTGRPKQRLVINANDRVATDADPDHRAYCAIKEERDRYLATLTLAVRREAAKPVEM CCCCCCCCCCEEEEEECCCCEECCCCCCCCEEEEEEHHCCCEEEEHHHHHHHHCCCCCCC PTGRLPPAPWIKDRLAALVPGLKRSPF CCCCCCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA