| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yddG [H]
Identifier: 146337696
GI number: 146337696
Start: 579473
End: 580345
Strand: Direct
Name: yddG [H]
Synonym: BRADO0564
Alternate gene names: 146337696
Gene position: 579473-580345 (Clockwise)
Preceding gene: 146337695
Following gene: 146337697
Centisome position: 7.77
GC content: 68.84
Gene sequence:
>873_bases ATGTCCCAGCGCACCGCGACCCTGATCGGTCTGACAGCGATCCTGATGTGGTCGCTGCTGGCCCTGTTGACGGTTGCGAC CGGCAAGATCCCCGCGTTTCAGCTTGCCGCGATGACATTCGCGGTCGGCGGCCTGGTCGGCATGCTGACCTGGATCGGCC GCCCAGCGGCGCCGCGCAGCCTCAAGCAGCCGATGCGGGCCTGGCTGGTCGGGGTCGGCGGATTGTTCGGCTACCACGCG CTGTATTTCCTCGCGCTGCGTTTCGCGCCGCCTGCAGAAGCGGGACTGCTGAACTATCTCTGGCCGCTCCTGATCGTGCT GTTCTCGGCGCTGCTGCCCGGCGAGCGGCTGGCCCTTCACCACGTGATCGGCGCCGCGCTCGGGCTCATCGGCACCGTGT TGCTGTTCATGGGCAACGGCGCGAGCTTCGCCGCCGACCAGCTGCCGGGATTGGCGGCGGCCTTCGTGGCGGCGTTCGTG TGGGCGATCTACTCGGTGCTGTCGCGCCGCCTCAAGGCGGTGCCGACCGATGCCGTGGCGGGCTTCTGTCTCGCGACCTC GCTGCTTGCGGCGGTGGTGCATGGGCTGGTCGAGCCTAAGGTATGGCCCGATGGTGCGGTCCAGTGGCTTGCGGTCGCAG GCCTCGGCATCGGCCCGGTGGGGGCGGCGTTCTATGCCTGGGATGTCGGCATGAAGCGCGGCGACATTCGCGTCCTCGGT GCGGCGTCCTATGCAACCCCACTGCTGTCGACCGCCTTTCTCATTCTCGCCGGCTACGCCCAGCCGACCGCCGCGATCGC TGTGGCGGCGCTGCTGATTGCCGGTGGCGGACTGGTCGCCGCGAAGGACCTCTTCCTGCTGCGCCGTCGCTAA
Upstream 100 bases:
>100_bases GCCCGCGCCTGCCGCGGGCATTCACGTCTTTGGCGTTGCCCGGCACGGGCACAGGCGTGAGCGGCCGAATGTCCTTGGCC GAGACGGAGCCTGCCGCCCG
Downstream 100 bases:
>100_bases GCGCCTGTGCTGCATCACCAGCGGGCCTGCGCCACGCCTGATCGAGCGGCCGCATCATGCTCGGCAGGAATCTGCCGATT ATCCTTGATGCGCACTTAAT
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSQRTATLIGLTAILMWSLLALLTVATGKIPAFQLAAMTFAVGGLVGMLTWIGRPAAPRSLKQPMRAWLVGVGGLFGYHA LYFLALRFAPPAEAGLLNYLWPLLIVLFSALLPGERLALHHVIGAALGLIGTVLLFMGNGASFAADQLPGLAAAFVAAFV WAIYSVLSRRLKAVPTDAVAGFCLATSLLAAVVHGLVEPKVWPDGAVQWLAVAGLGIGPVGAAFYAWDVGMKRGDIRVLG AASYATPLLSTAFLILAGYAQPTAAIAVAALLIAGGGLVAAKDLFLLRRR
Sequences:
>Translated_290_residues MSQRTATLIGLTAILMWSLLALLTVATGKIPAFQLAAMTFAVGGLVGMLTWIGRPAAPRSLKQPMRAWLVGVGGLFGYHA LYFLALRFAPPAEAGLLNYLWPLLIVLFSALLPGERLALHHVIGAALGLIGTVLLFMGNGASFAADQLPGLAAAFVAAFV WAIYSVLSRRLKAVPTDAVAGFCLATSLLAAVVHGLVEPKVWPDGAVQWLAVAGLGIGPVGAAFYAWDVGMKRGDIRVLG AASYATPLLSTAFLILAGYAQPTAAIAVAALLIAGGGLVAAKDLFLLRRR >Mature_289_residues SQRTATLIGLTAILMWSLLALLTVATGKIPAFQLAAMTFAVGGLVGMLTWIGRPAAPRSLKQPMRAWLVGVGGLFGYHAL YFLALRFAPPAEAGLLNYLWPLLIVLFSALLPGERLALHHVIGAALGLIGTVLLFMGNGASFAADQLPGLAAAFVAAFVW AIYSVLSRRLKAVPTDAVAGFCLATSLLAAVVHGLVEPKVWPDGAVQWLAVAGLGIGPVGAAFYAWDVGMKRGDIRVLGA ASYATPLLSTAFLILAGYAQPTAAIAVAALLIAGGGLVAAKDLFLLRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DUF6 domain [H]
Homologues:
Organism=Escherichia coli, GI145693132, Length=295, Percent_Identity=28.135593220339, Blast_Score=78, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 30153; Mature: 30022
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRTATLIGLTAILMWSLLALLTVATGKIPAFQLAAMTFAVGGLVGMLTWIGRPAAPRS CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LKQPMRAWLVGVGGLFGYHALYFLALRFAPPAEAGLLNYLWPLLIVLFSALLPGERLALH HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH HVIGAALGLIGTVLLFMGNGASFAADQLPGLAAAFVAAFVWAIYSVLSRRLKAVPTDAVA HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GFCLATSLLAAVVHGLVEPKVWPDGAVQWLAVAGLGIGPVGAAFYAWDVGMKRGDIRVLG HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE AASYATPLLSTAFLILAGYAQPTAAIAVAALLIAGGGLVAAKDLFLLRRR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure SQRTATLIGLTAILMWSLLALLTVATGKIPAFQLAAMTFAVGGLVGMLTWIGRPAAPRS CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LKQPMRAWLVGVGGLFGYHALYFLALRFAPPAEAGLLNYLWPLLIVLFSALLPGERLALH HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH HVIGAALGLIGTVLLFMGNGASFAADQLPGLAAAFVAAFVWAIYSVLSRRLKAVPTDAVA HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GFCLATSLLAAVVHGLVEPKVWPDGAVQWLAVAGLGIGPVGAAFYAWDVGMKRGDIRVLG HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEE AASYATPLLSTAFLILAGYAQPTAAIAVAALLIAGGGLVAAKDLFLLRRR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1834669; 7567469 [H]