Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 146337697

GI number: 146337697

Start: 580554

End: 582590

Strand: Direct

Name: yciR [C]

Synonym: BRADO0565

Alternate gene names: 146337697

Gene position: 580554-582590 (Clockwise)

Preceding gene: 146337696

Following gene: 146337700

Centisome position: 7.79

GC content: 64.7

Gene sequence:

>2037_bases
ATGAGAACGACAACGGGGCGGCGGATGCCGGACGTGAGACGTTATATCGCTCGCGCGGGGAACTTGTTTCGCGTGCCCGC
GGACAATCCCGAGCTGACGCGCGCGCAGTTTCAGGCGTTCGCCAAGCAAATGCCGCTGCTGTATTTCATCCTGATCACCA
ACAGCCTTGCGCTCGCTTACACGTTCCTGCCGCTGGCCCCGATGGGGCTCACATTGGCCGTGCCGGCACTGCTGTCGGCC
ATCACCAGCGTCCGCATGGTCTGGTGGTTGCGGCAAGGCCATAACGTCTGCACCGACGCGGAAGCGCTGCAGTATCTACG
CCTGACCAACCGCATTGCCGGACCGATCGGCGCGCTGTTCGTCGTCTGGTCGTTCTCACTGTTTCCCTATGGCGATCCGT
TCGCCCAGGGGCAGGTGGCGTTCTACATGGCGGTGACGGTGATCGGGATCATCTTCTGCCTGATGCACCTGCGCTCGGCG
GCGCTGATCGTCACGCTGGTGGTGATCGTCCCCTATGTCATCTTCTTCATGGCGACCGGCGTCCACGCCCTCCGTGCGAT
CGCAGTCAATCAGCTGCTCGTCTCCTGCGCGATGGTGACGGTGCTGTTCATCTACTATCGCGACTTCGCCGCGCTCGTCG
ACAGCCGCAAGTCGCTGCTCGCCGAGCAGGCCGCGACCCAGGCTCTGTCGGACGAGAATTTCCGGCTCGCCAATCTCGAT
TCCTTGACCGACCTGCCCAACCGCCGCCGCTTCTTTTCGGAGCTCACGAATGCCTTCGCCGAGGCCGAGCGCGACGGCAC
GCGGCTCGCTGTCGGCATCATCGATCTCGACGGCTTCAAGCCGGTGAACGACACCTACGGGCACACCGTCGGCGACCGCG
TCCTGATGGAAGCCGCGCGCCGCATTCGCGACGTCTGCGAGCGCCGTGGCGCACAGGTGCATCTGGCGAGGCTCGGCGGC
GACGAGTTCGGCCTGGTCGTGACGGGCAATCCGACCGACGACGATCTGCTCTCGCTCGGGCGTGACATCACCGAGCGGAT
CAAGCTGCCCTATCAGTTCGATGCGACGCATTCCGGGCTGTCCTGCTCGACCGGGTTTGCGCTCTATCCACGCTCGGCTA
CGGCGGCCGATGCGCTGTATGAGTGCGCCGACTACGCGCTGTATCACGCCAAGCGCCGCGCGCGCGGACAGGCGATCATC
TTCTCCAGCGAGCTGGAGGCGGAGATCCGCAGCCGCAGCGTGATCGAGCATCTGTTGCGTACGGCCGATTTCGAGACCGA
GATGGATCTGGCGTTCCAGCCGATCATGGACGCCACCAATTCGCGCACCACCGGCTTCGAGGTCCTGGCGCGCTGGAACA
GTCCGAAGCTGGGACTGGTTTCGCCTGCGAGCTTCATTCCGGCGGCCGAGCGGATCGGCGTGATCCGCAGCCTCACTCGC
TTCCTGCTGGTGAAGGCCCTGGCGGCAGCCCGGACTTGGCCCGACGACATCCGGATCTCGTTCAATCTTTCGGCGCACGA
TATCTGCGCGCCCGAAGGGGTGCTGCCGCTGATCGCCGTGATCCAGGCCAGCGGCGTGCCGCCGCGCCGCATCGAGTTTG
AGATCACCGAGACTGCCGTCGCGTTCGATTTCGCGCGGGCCGAAGAATCCATCGCGGCCCTGAAGGCGCTCGGATGCGGC
ATCTCGCTGGACGATTTCGGCACCGGCTACTCGTCGCTCAGCCACGTGCACCGGCTGCCGCTGGACAAGCTCAAGGTCGA
CCGCAGCTTCGTGCACGACGTCAATGCCAATCCGGTCAGTCACAAGATCATCAAGTCGCTGACCGGCCTTTGCGCGGACA
TGGACATCTCCTGCGTCGTGGAGGGCGTCGAGACCAAAGAGCAGCTCGACAGCCTGAAGCGTCTCGGAGCCGATTACATC
CAGGGCTATTATTTCGCCGAGCCGATGCCGGCCGATGCGATCTCAGGCTTTCTGGCGCGGGAGCGCCAGCACTTCGCCGA
TCGGGCCAGCGTCAAGGTCGCCGGCGCCAGCGCCTGA

Upstream 100 bases:

>100_bases
GTTCGGGGGGCGTCGGCAGGTAGACTACAACCGCCGATGCTGTGCCGAGCCTCTCTGCACCTAACGCGCCCTTTACCCGT
CCAGGCCAGACTGAGCCCGA

Downstream 100 bases:

>100_bases
GCTATACGGGCTCCCAGTCCGCGGGCGCCAGCTCGAATCCGGCGAAGTCGAAGCCGGGGGCGACGGTGCAGCCGACCAGG
GTCCAGTCGCCCGTGCTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MRTTTGRRMPDVRRYIARAGNLFRVPADNPELTRAQFQAFAKQMPLLYFILITNSLALAYTFLPLAPMGLTLAVPALLSA
ITSVRMVWWLRQGHNVCTDAEALQYLRLTNRIAGPIGALFVVWSFSLFPYGDPFAQGQVAFYMAVTVIGIIFCLMHLRSA
ALIVTLVVIVPYVIFFMATGVHALRAIAVNQLLVSCAMVTVLFIYYRDFAALVDSRKSLLAEQAATQALSDENFRLANLD
SLTDLPNRRRFFSELTNAFAEAERDGTRLAVGIIDLDGFKPVNDTYGHTVGDRVLMEAARRIRDVCERRGAQVHLARLGG
DEFGLVVTGNPTDDDLLSLGRDITERIKLPYQFDATHSGLSCSTGFALYPRSATAADALYECADYALYHAKRRARGQAII
FSSELEAEIRSRSVIEHLLRTADFETEMDLAFQPIMDATNSRTTGFEVLARWNSPKLGLVSPASFIPAAERIGVIRSLTR
FLLVKALAAARTWPDDIRISFNLSAHDICAPEGVLPLIAVIQASGVPPRRIEFEITETAVAFDFARAEESIAALKALGCG
ISLDDFGTGYSSLSHVHRLPLDKLKVDRSFVHDVNANPVSHKIIKSLTGLCADMDISCVVEGVETKEQLDSLKRLGADYI
QGYYFAEPMPADAISGFLARERQHFADRASVKVAGASA

Sequences:

>Translated_678_residues
MRTTTGRRMPDVRRYIARAGNLFRVPADNPELTRAQFQAFAKQMPLLYFILITNSLALAYTFLPLAPMGLTLAVPALLSA
ITSVRMVWWLRQGHNVCTDAEALQYLRLTNRIAGPIGALFVVWSFSLFPYGDPFAQGQVAFYMAVTVIGIIFCLMHLRSA
ALIVTLVVIVPYVIFFMATGVHALRAIAVNQLLVSCAMVTVLFIYYRDFAALVDSRKSLLAEQAATQALSDENFRLANLD
SLTDLPNRRRFFSELTNAFAEAERDGTRLAVGIIDLDGFKPVNDTYGHTVGDRVLMEAARRIRDVCERRGAQVHLARLGG
DEFGLVVTGNPTDDDLLSLGRDITERIKLPYQFDATHSGLSCSTGFALYPRSATAADALYECADYALYHAKRRARGQAII
FSSELEAEIRSRSVIEHLLRTADFETEMDLAFQPIMDATNSRTTGFEVLARWNSPKLGLVSPASFIPAAERIGVIRSLTR
FLLVKALAAARTWPDDIRISFNLSAHDICAPEGVLPLIAVIQASGVPPRRIEFEITETAVAFDFARAEESIAALKALGCG
ISLDDFGTGYSSLSHVHRLPLDKLKVDRSFVHDVNANPVSHKIIKSLTGLCADMDISCVVEGVETKEQLDSLKRLGADYI
QGYYFAEPMPADAISGFLARERQHFADRASVKVAGASA
>Mature_678_residues
MRTTTGRRMPDVRRYIARAGNLFRVPADNPELTRAQFQAFAKQMPLLYFILITNSLALAYTFLPLAPMGLTLAVPALLSA
ITSVRMVWWLRQGHNVCTDAEALQYLRLTNRIAGPIGALFVVWSFSLFPYGDPFAQGQVAFYMAVTVIGIIFCLMHLRSA
ALIVTLVVIVPYVIFFMATGVHALRAIAVNQLLVSCAMVTVLFIYYRDFAALVDSRKSLLAEQAATQALSDENFRLANLD
SLTDLPNRRRFFSELTNAFAEAERDGTRLAVGIIDLDGFKPVNDTYGHTVGDRVLMEAARRIRDVCERRGAQVHLARLGG
DEFGLVVTGNPTDDDLLSLGRDITERIKLPYQFDATHSGLSCSTGFALYPRSATAADALYECADYALYHAKRRARGQAII
FSSELEAEIRSRSVIEHLLRTADFETEMDLAFQPIMDATNSRTTGFEVLARWNSPKLGLVSPASFIPAAERIGVIRSLTR
FLLVKALAAARTWPDDIRISFNLSAHDICAPEGVLPLIAVIQASGVPPRRIEFEITETAVAFDFARAEESIAALKALGCG
ISLDDFGTGYSSLSHVHRLPLDKLKVDRSFVHDVNANPVSHKIIKSLTGLCADMDISCVVEGVETKEQLDSLKRLGADYI
QGYYFAEPMPADAISGFLARERQHFADRASVKVAGASA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=33.8785046728972, Blast_Score=238, Evalue=1e-63,
Organism=Escherichia coli, GI87081921, Length=454, Percent_Identity=28.4140969162996, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=38.2352941176471, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=31.8367346938775, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1787055, Length=594, Percent_Identity=23.4006734006734, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=32.3529411764706, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=224, Percent_Identity=31.25, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=23.7410071942446, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=30.6382978723404, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=32.4110671936759, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=28.4, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=506, Percent_Identity=25.296442687747, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788381, Length=431, Percent_Identity=25.9860788863109, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=35.0515463917526, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=187, Percent_Identity=33.1550802139037, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=34.8837209302326, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=29.7297297297297, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=33.1491712707182, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=34.9112426035503, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=32.3170731707317, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=33.7349397590361, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74690; Mature: 74690

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCEEECCCCC
>Mature Secondary Structure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HHHHHHHHCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]