| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ydfG [C]
Identifier: 146337597
GI number: 146337597
Start: 465097
End: 465891
Strand: Direct
Name: ydfG [C]
Synonym: BRADO0453
Alternate gene names: 146337597
Gene position: 465097-465891 (Clockwise)
Preceding gene: 146337594
Following gene: 146337598
Centisome position: 6.24
GC content: 68.43
Gene sequence:
>795_bases ATGACCAGCCAAACCAAGGGCGCCGTCCTCATCACCGGTGCGTCGTCCGGCATCGGCGCAGTTTATGCCGAGCGCTTCGC TGCACGCGGCCATGACCTCATCCTGGTCGCCCGCAATCAGGACCGTCTGAACGCGATCGCCGACAAGCTGACGGCCCGTC ATGGCGTGAAGGTCAAGACGCTGGTCGCCGACCTCACCGCGCGGGACGATCTCGCCCGGGTCGAGGCCGTGCTGAAGAGC GACGCCTCGATCACTCACCTCGTCAACAATGCGGGCTTCGGTAGCGCCGCGCCGCTCGCCAAGGCCGATGTCGACGAGAT GGAGAGAATGGTGGCGATCAACGTCACCGCGCCGCTGCGGCTGACCTACGCGGCGGTCCCGCAATTCGTCGCGCGCCAGC AGGGCACCATCATCAACATCGCCTCGATCGTCGCGATCGGACCCGAGGTCCTCAACGGCGTCTACGGCGGCACGAAATCC TTCGTGCTCGCGTTCAGCCAGTCGCTGCGCAAGGAACTCGCCGGCACCGGCGTGCATGTCCAGGTCGTGCTGCCCGGCGC GACCGGCACTGAATTCTGGGACATCGCCGGCCTGCCCGCCAGCAACCTGCCGAAGGAGTGGGTGATGTCGGCCGCCGATC TGGTCGACGCCGCCTTGCGCGGCCTCGACCGCGGCGAGTTCGCCACCGTGCCCTCGCTCGCCGACGGCGCCGAGTTCGAC GCGTGGGAAGCCGCCCGCCAGACCATGCTGCCGCATCTGTCGAGCGCCGCGGTCGCCGAGCGCTATCGGGCGTGA
Upstream 100 bases:
>100_bases TTTGACGTTTATATGGCATTTGAGACGCGGAAATCCAGCTCTACTTTCTCGTAACGCAACAGACCGAGCGCCCGCAGCGG CACGAGAAGGGAATTCAGCC
Downstream 100 bases:
>100_bases AGCGTTCGGGCTGGTGCCGATCGCGGTTGCAAGCCGCCGGCACCGGCGAGCGTCCGCCGACCCGGTGTCGTTCTGTTGCT CGCGGAGGCCAATCGGCTAG
Product: putative oxidoreductase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTSQTKGAVLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAIADKLTARHGVKVKTLVADLTARDDLARVEAVLKS DASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLRLTYAAVPQFVARQQGTIINIASIVAIGPEVLNGVYGGTKS FVLAFSQSLRKELAGTGVHVQVVLPGATGTEFWDIAGLPASNLPKEWVMSAADLVDAALRGLDRGEFATVPSLADGAEFD AWEAARQTMLPHLSSAAVAERYRA
Sequences:
>Translated_264_residues MTSQTKGAVLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAIADKLTARHGVKVKTLVADLTARDDLARVEAVLKS DASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLRLTYAAVPQFVARQQGTIINIASIVAIGPEVLNGVYGGTKS FVLAFSQSLRKELAGTGVHVQVVLPGATGTEFWDIAGLPASNLPKEWVMSAADLVDAALRGLDRGEFATVPSLADGAEFD AWEAARQTMLPHLSSAAVAERYRA >Mature_263_residues TSQTKGAVLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAIADKLTARHGVKVKTLVADLTARDDLARVEAVLKSD ASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLRLTYAAVPQFVARQQGTIINIASIVAIGPEVLNGVYGGTKSF VLAFSQSLRKELAGTGVHVQVVLPGATGTEFWDIAGLPASNLPKEWVMSAADLVDAALRGLDRGEFATVPSLADGAEFDA WEAARQTMLPHLSSAAVAERYRA
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=187, Percent_Identity=32.0855614973262, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI4557649, Length=183, Percent_Identity=33.879781420765, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI226371731, Length=184, Percent_Identity=28.804347826087, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=34.375, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=28.4153005464481, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI5031737, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI142976729, Length=198, Percent_Identity=32.3232323232323, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=26.7379679144385, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI19743808, Length=182, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI150247226, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=190, Percent_Identity=37.3684210526316, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=33.1550802139037, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=30.8900523560209, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=24.5901639344262, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=26.1224489795918, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=31.4432989690722, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=32.4742268041237, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=31.9371727748691, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=31.9047619047619, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17559552, Length=201, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17557668, Length=201, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=31.5270935960591, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560176, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI212646214, Length=190, Percent_Identity=28.9473684210526, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508895, Length=214, Percent_Identity=28.9719626168224, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17560332, Length=243, Percent_Identity=30.0411522633745, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI115534694, Length=189, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17544670, Length=202, Percent_Identity=31.6831683168317, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563726, Length=206, Percent_Identity=29.126213592233, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17562906, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562908, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193204405, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17555706, Length=184, Percent_Identity=29.3478260869565, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562990, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562910, Length=225, Percent_Identity=27.1111111111111, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=34.2245989304813, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=34.5360824742268, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=26.063829787234, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24584748, Length=183, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=31.413612565445, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=32.258064516129, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=32.258064516129, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI28571526, Length=201, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21357041, Length=201, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24644339, Length=200, Percent_Identity=33.5, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=34.2391304347826, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24584752, Length=185, Percent_Identity=29.1891891891892, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI116007236, Length=208, Percent_Identity=29.8076923076923, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=31.3829787234043, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24649181, Length=184, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI45553409, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24647948, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24647946, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648944, Length=223, Percent_Identity=27.8026905829596, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27758; Mature: 27627
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQTKGAVLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAIADKLTARHGVKVKT CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH LVADLTARDDLARVEAVLKSDASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLR HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEEECCCHH LTYAAVPQFVARQQGTIINIASIVAIGPEVLNGVYGGTKSFVLAFSQSLRKELAGTGVHV HHHHHHHHHHHHCCCCEEEHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEE QVVLPGATGTEFWDIAGLPASNLPKEWVMSAADLVDAALRGLDRGEFATVPSLADGAEFD EEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH AWEAARQTMLPHLSSAAVAERYRA HHHHHHHHHHHCHHHHHHHHHHCC >Mature Secondary Structure TSQTKGAVLITGASSGIGAVYAERFAARGHDLILVARNQDRLNAIADKLTARHGVKVKT CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH LVADLTARDDLARVEAVLKSDASITHLVNNAGFGSAAPLAKADVDEMERMVAINVTAPLR HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEEECCCHH LTYAAVPQFVARQQGTIINIASIVAIGPEVLNGVYGGTKSFVLAFSQSLRKELAGTGVHV HHHHHHHHHHHHCCCCEEEHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEE QVVLPGATGTEFWDIAGLPASNLPKEWVMSAADLVDAALRGLDRGEFATVPSLADGAEFD EEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH AWEAARQTMLPHLSSAAVAERYRA HHHHHHHHHHHCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]