Click here to switch to the map view.

The map label for this gene is yqcB [C]

Identifier: 146337531

GI number: 146337531

Start: 390678

End: 391580

Strand: Reverse

Name: yqcB [C]

Synonym: BRADO0385

Alternate gene names: 146337531

Gene position: 391580-390678 (Counterclockwise)

Preceding gene: 146337534

Following gene: 146337528

Centisome position: 5.25

GC content: 68.99

Gene sequence:

>903_bases
ATGGACATTAACCAACCCACCGACGAGGAGATGCTGGCCCGCGTGCTTCACCGCGACGGGCTGATGCTGGTGATCGACAA
GCCCGCCGGCATTCCCGTGCACAAGGGACCGAAGGGCGGCCCGAACCTCGAAGCCTCGTTCGACGCCCTGCGCTTTGGCC
TGCCGCGCCCGCCGGTGCTGGCACATCGGCTCGACAAGGAAACCTCCGGCTGCCTCGTGCTCGGCCGCCATCGCAAGGCA
ACGGCGTCGCTCGGGCTTTTGTTCAAGCACGGCAAGATTTCGAAGACCTATTGGGCCGTGGTCGAGGGCGGCCCGGAGGC
TGACGAAGGCGTGATCGAGCTGCCGCTGGGCAAGCTCAACGCCGAGCGCGGCTGGTGGCAGAAGCCTGATCCGAGCGGGC
AGCCGGCGGTGACGAAGTGGCGGGTGCTGGGGCGGTCGTACGCTGTCGCTGCGGCCGACCCATCGCCAAGCTCACCTCCC
ACTTGTGGCACGACCTCCCCTCCCCCTTGCGGGGAGGGGTCGGGGGTGGGGGTCCCCACGGGCATTGCCGCCCGGAGCCA
CCCCCCACCCCGACCCTCCCCCGCAAGGGGGGAGGGAGCAGATCGCGCCACTGGCGAGAGCGCGGCCTCATCAGGCAAGG
CACCCAAGCTCACCTGGCTTGCCATGGAACCCATCACCGGCCGCACCCACCAACTCCGCGTGCATTCCGCCGCGTCCGGC
TGGCCGATCATAGGCGACAACATCTACGGCAACGGCCCGCGCTTCGGCGAGCCGCGGCTGCATCTGCATGCGCGGGAGAT
TTCCATCCCGCTCTCGAAGAACAAGCCGCCGGTGCAGGTGGTTGCGCCGGCGCCGCTGCACATGCATGAGCGGCTGCGGC
TGTGCGGGTGGAATGGGGAGTGA

Upstream 100 bases:

>100_bases
CACCACGACCGCTTGGGTGTTTCGGAGGTGGTATCGTTCATGGCGTGGTGTTAGCCCTTTCCTCTTCCAAACGAAAGCTC
ACACCGGCGTTACGGTTTCC

Downstream 100 bases:

>100_bases
AGCGTCTCGGACGCAAGTGAGACCCTGCACTCTCGCCCACACCACAGCTGTCATCGCCCGGCTCGACCGGGCGATCCAGT
ATTCCAGAGGCGGTTATTAT

Product: putative RNA pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDINQPTDEEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCLVLGRHRKA
TASLGLLFKHGKISKTYWAVVEGGPEADEGVIELPLGKLNAERGWWQKPDPSGQPAVTKWRVLGRSYAVAAADPSPSSPP
TCGTTSPPPCGEGSGVGVPTGIAARSHPPPRPSPARGEGADRATGESAASSGKAPKLTWLAMEPITGRTHQLRVHSAASG
WPIIGDNIYGNGPRFGEPRLHLHAREISIPLSKNKPPVQVVAPAPLHMHERLRLCGWNGE

Sequences:

>Translated_300_residues
MDINQPTDEEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCLVLGRHRKA
TASLGLLFKHGKISKTYWAVVEGGPEADEGVIELPLGKLNAERGWWQKPDPSGQPAVTKWRVLGRSYAVAAADPSPSSPP
TCGTTSPPPCGEGSGVGVPTGIAARSHPPPRPSPARGEGADRATGESAASSGKAPKLTWLAMEPITGRTHQLRVHSAASG
WPIIGDNIYGNGPRFGEPRLHLHAREISIPLSKNKPPVQVVAPAPLHMHERLRLCGWNGE
>Mature_300_residues
MDINQPTDEEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCLVLGRHRKA
TASLGLLFKHGKISKTYWAVVEGGPEADEGVIELPLGKLNAERGWWQKPDPSGQPAVTKWRVLGRSYAVAAADPSPSSPP
TCGTTSPPPCGEGSGVGVPTGIAARSHPPPRPSPARGEGADRATGESAASSGKAPKLTWLAMEPITGRTHQLRVHSAASG
WPIIGDNIYGNGPRFGEPRLHLHAREISIPLSKNKPPVQVVAPAPLHMHERLRLCGWNGE

Specific function: Unknown

COG id: COG0564

COG function: function code J; Pseudouridylate synthases, 23S RNA-specific

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rluA family [H]

Homologues:

Organism=Homo sapiens, GI221316667, Length=148, Percent_Identity=30.4054054054054, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI221316663, Length=166, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006224
- InterPro:   IPR006145 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 31926; Mature: 31926

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS01129 PSI_RLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINQPTDEEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVL
CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHH
AHRLDKETSGCLVLGRHRKATASLGLLFKHGKISKTYWAVVEGGPEADEGVIELPLGKLN
HHHHCCCCCCEEEEECCCCCHHHEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCC
AERGWWQKPDPSGQPAVTKWRVLGRSYAVAAADPSPSSPPTCGTTSPPPCGEGSGVGVPT
CCCCCCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GIAARSHPPPRPSPARGEGADRATGESAASSGKAPKLTWLAMEPITGRTHQLRVHSAASG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCCC
WPIIGDNIYGNGPRFGEPRLHLHAREISIPLSKNKPPVQVVAPAPLHMHERLRLCGWNGE
CCEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCHHHHHEECCCCCC
>Mature Secondary Structure
MDINQPTDEEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVL
CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHH
AHRLDKETSGCLVLGRHRKATASLGLLFKHGKISKTYWAVVEGGPEADEGVIELPLGKLN
HHHHCCCCCCEEEEECCCCCHHHEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCC
AERGWWQKPDPSGQPAVTKWRVLGRSYAVAAADPSPSSPPTCGTTSPPPCGEGSGVGVPT
CCCCCCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GIAARSHPPPRPSPARGEGADRATGESAASSGKAPKLTWLAMEPITGRTHQLRVHSAASG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCCC
WPIIGDNIYGNGPRFGEPRLHLHAREISIPLSKNKPPVQVVAPAPLHMHERLRLCGWNGE
CCEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9515924 [H]