| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146337493
Identifier: 146337493
GI number: 146337493
Start: 352908
End: 354599
Strand: Reverse
Name: 146337493
Synonym: BRADO0339
Alternate gene names: NA
Gene position: 354599-352908 (Counterclockwise)
Preceding gene: 146337494
Following gene: 146337492
Centisome position: 4.76
GC content: 67.91
Gene sequence:
>1692_bases ATGTCCAATGTCAGCGGCGTATCGGTATCCGTATCCGGTCTGTGGCCGGGACGGGCCGACCGGCTGATCATTGCACCGCA TGACCTGCGCACGTCGGACGCCACCCGAGCGGCCGAGATCTATGCCGGGCGATTCGTCTTCGCCGGCAAGATCGTCACCT GCCATGGCCGTTCGATCTTCGACCTGGAGCCGCCGTCGGAGGATTGGGAGGTCGCGCTGCTCGGCTTCGGCTGGCTGCGT CACTTGCGCGCAGCCGACACCGCGCTGACCCGGGCCAATGCGCGGGCGCTGGTCGACGACTGGATCACCAACCAGATCGG CCGCCACCCCTTGAGCCGCCGCGCCGACGTGCTGGCGCGCCGCGTGATCTCGCTGCTGTCGCAGGCGCCGCTGGTGCTGG CGGATTCCGACGGAAAGTTCTATCGCCGCTATCTGCGCGGCCTGACCCGCGAGATTCGTTTCCTGCGCTATTCGACCATC GACATTCCGGACGGCGTGCCGCGGCTGCAGGTGCTGATCGCGCTGTGTTACGCCGCGCTGTGCCTCGCCAACCAGGCCAA GCACATCCGCAGCGCCAGCCGGAAATTGTCGGAAGAGCTGCAACGCCAGATCCTGCCCGACGGCGGGCACGTGTCGCGCA ACCCAGGCGCCCTGATCGAGCTCCTGATCGACCTCCTGCCGCTGCGCCAGACCTTCGCCGCGCGCAACATCGCCCCGCCC CCGGCACTGCTCAACGCCATCGACCGGATGATGCCGATGCTGCGCTTCTTTCGGCACGGTGACGGCAACATGGCGCTGTT CAACGGCATGGGCGGCACGCCGACCGACCTGCTGGCAACCCTGCTCGCCTATGACGACACGCACGGCACGCCGATGGCGA GCATGCCGCATTCGGGCTTCCAGCGCCTGGATGCCGGGCAGATGACGGTGATCGTCGACACCGGCGCGCCGCCGCCGCCG CATCTCAGCCACGAGGCCCATGCCGGCTGTCTCGCTTTCGAACTGTCGTCGGGCACGAGCCGCATCGTGATCAATTGCGG CCTGCCCTCGACGGGCCGCGACAACTGGCGCACCTTCGCGCGCTCGACGGTCGCGCATTCGACGCTGACCTATCACAACA CCTCGTCTTGCACCTTTGTCGAGATGTCGGCGATGAAGCGCCTGCTGCATGGCGCGCCGATCGTGTCGGGCCCGACGCGC GTGGAGAATTTCCGCGAGATCGTGCCGGACGGCACCGTGCTGTCGACCTCGCATAACGGCTACGCGGCGAAGTTCGGCCT GATCCACCGCCGTGTGCTCGTGGCCGCCGAAGACGGCTCGCGGCTCGACGGCGAGGACACCGTGACTCCCGCGCAAGGCG CGCGGCTGCGCGGCGGCGGCTCGGACTACACGCTGCGTTTCCATCTGCATCCCGCCGTGAAGGCGAGCCGCCTCAGTGAC GGACACGGTGCCATGCTGGTGCTGCCAAACCGCGAGGTCTGGACGTTCGAGACCTTCGACGATCGCGTCGATCTCGAGGA CAGCGTGTTCCTTGCCGGCAATGACGGCCCGCGCCGCACGACGCAGCTCGTGATCCGCCAGGATGCCCAGCAGTCCCCCT CGATCCGCTGGAGCTTCGTGCGCTCCTCGACATCGCCGAGCGAGACCAACGCGCGGAGGAATGCACGGCGAGAGCCGGAG CTGCCGCTGTAG
Upstream 100 bases:
>100_bases GTCCGCAACCGAATCCCCTCTCGTGTTAAGGCTTGGCGTGTCCGCCGCTCAACGCAGACGCATATCGACACTGGTCTTGG GCCGCGCGGCGCGCAGCCTG
Downstream 100 bases:
>100_bases GGCCGACATTATCTGCTCAAGCGACAGACGGGTGATACACCGACTGCTTCAGCACGGGCAGTGTGCTCCCTCTCCTCGTT CTTACGGGGAGAGGGTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Heparinase II/III-Like; Heparinase II/III-Like Protein; Heparinase II/III-Like Family Protein; Cytoplasmic Protein; Heparinase II/Iii Family Protein
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSNVSGVSVSVSGLWPGRADRLIIAPHDLRTSDATRAAEIYAGRFVFAGKIVTCHGRSIFDLEPPSEDWEVALLGFGWLR HLRAADTALTRANARALVDDWITNQIGRHPLSRRADVLARRVISLLSQAPLVLADSDGKFYRRYLRGLTREIRFLRYSTI DIPDGVPRLQVLIALCYAALCLANQAKHIRSASRKLSEELQRQILPDGGHVSRNPGALIELLIDLLPLRQTFAARNIAPP PALLNAIDRMMPMLRFFRHGDGNMALFNGMGGTPTDLLATLLAYDDTHGTPMASMPHSGFQRLDAGQMTVIVDTGAPPPP HLSHEAHAGCLAFELSSGTSRIVINCGLPSTGRDNWRTFARSTVAHSTLTYHNTSSCTFVEMSAMKRLLHGAPIVSGPTR VENFREIVPDGTVLSTSHNGYAAKFGLIHRRVLVAAEDGSRLDGEDTVTPAQGARLRGGGSDYTLRFHLHPAVKASRLSD GHGAMLVLPNREVWTFETFDDRVDLEDSVFLAGNDGPRRTTQLVIRQDAQQSPSIRWSFVRSSTSPSETNARRNARREPE LPL
Sequences:
>Translated_563_residues MSNVSGVSVSVSGLWPGRADRLIIAPHDLRTSDATRAAEIYAGRFVFAGKIVTCHGRSIFDLEPPSEDWEVALLGFGWLR HLRAADTALTRANARALVDDWITNQIGRHPLSRRADVLARRVISLLSQAPLVLADSDGKFYRRYLRGLTREIRFLRYSTI DIPDGVPRLQVLIALCYAALCLANQAKHIRSASRKLSEELQRQILPDGGHVSRNPGALIELLIDLLPLRQTFAARNIAPP PALLNAIDRMMPMLRFFRHGDGNMALFNGMGGTPTDLLATLLAYDDTHGTPMASMPHSGFQRLDAGQMTVIVDTGAPPPP HLSHEAHAGCLAFELSSGTSRIVINCGLPSTGRDNWRTFARSTVAHSTLTYHNTSSCTFVEMSAMKRLLHGAPIVSGPTR VENFREIVPDGTVLSTSHNGYAAKFGLIHRRVLVAAEDGSRLDGEDTVTPAQGARLRGGGSDYTLRFHLHPAVKASRLSD GHGAMLVLPNREVWTFETFDDRVDLEDSVFLAGNDGPRRTTQLVIRQDAQQSPSIRWSFVRSSTSPSETNARRNARREPE LPL >Mature_562_residues SNVSGVSVSVSGLWPGRADRLIIAPHDLRTSDATRAAEIYAGRFVFAGKIVTCHGRSIFDLEPPSEDWEVALLGFGWLRH LRAADTALTRANARALVDDWITNQIGRHPLSRRADVLARRVISLLSQAPLVLADSDGKFYRRYLRGLTREIRFLRYSTID IPDGVPRLQVLIALCYAALCLANQAKHIRSASRKLSEELQRQILPDGGHVSRNPGALIELLIDLLPLRQTFAARNIAPPP ALLNAIDRMMPMLRFFRHGDGNMALFNGMGGTPTDLLATLLAYDDTHGTPMASMPHSGFQRLDAGQMTVIVDTGAPPPPH LSHEAHAGCLAFELSSGTSRIVINCGLPSTGRDNWRTFARSTVAHSTLTYHNTSSCTFVEMSAMKRLLHGAPIVSGPTRV ENFREIVPDGTVLSTSHNGYAAKFGLIHRRVLVAAEDGSRLDGEDTVTPAQGARLRGGGSDYTLRFHLHPAVKASRLSDG HGAMLVLPNREVWTFETFDDRVDLEDSVFLAGNDGPRRTTQLVIRQDAQQSPSIRWSFVRSSTSPSETNARRNARREPEL PL
Specific function: Unknown
COG id: COG5360
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61867; Mature: 61736
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNVSGVSVSVSGLWPGRADRLIIAPHDLRTSDATRAAEIYAGRFVFAGKIVTCHGRSIF CCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHCEEEEECEEEEECCCEEE DLEPPSEDWEVALLGFGWLRHLRAADTALTRANARALVDDWITNQIGRHPLSRRADVLAR ECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHH RVISLLSQAPLVLADSDGKFYRRYLRGLTREIRFLRYSTIDIPDGVPRLQVLIALCYAAL HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHH CLANQAKHIRSASRKLSEELQRQILPDGGHVSRNPGALIELLIDLLPLRQTFAARNIAPP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PALLNAIDRMMPMLRFFRHGDGNMALFNGMGGTPTDLLATLLAYDDTHGTPMASMPHSGF HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH QRLDAGQMTVIVDTGAPPPPHLSHEAHAGCLAFELSSGTSRIVINCGLPSTGRDNWRTFA HHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHH RSTVAHSTLTYHNTSSCTFVEMSAMKRLLHGAPIVSGPTRVENFREIVPDGTVLSTSHNG HHHHHHCEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCC YAAKFGLIHRRVLVAAEDGSRLDGEDTVTPAQGARLRGGGSDYTLRFHLHPAVKASRLSD CCHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCHHHCCCC GHGAMLVLPNREVWTFETFDDRVDLEDSVFLAGNDGPRRTTQLVIRQDAQQSPSIRWSFV CCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE RSSTSPSETNARRNARREPELPL ECCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure SNVSGVSVSVSGLWPGRADRLIIAPHDLRTSDATRAAEIYAGRFVFAGKIVTCHGRSIF CCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHCEEEEECEEEEECCCEEE DLEPPSEDWEVALLGFGWLRHLRAADTALTRANARALVDDWITNQIGRHPLSRRADVLAR ECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHH RVISLLSQAPLVLADSDGKFYRRYLRGLTREIRFLRYSTIDIPDGVPRLQVLIALCYAAL HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHH CLANQAKHIRSASRKLSEELQRQILPDGGHVSRNPGALIELLIDLLPLRQTFAARNIAPP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PALLNAIDRMMPMLRFFRHGDGNMALFNGMGGTPTDLLATLLAYDDTHGTPMASMPHSGF HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH QRLDAGQMTVIVDTGAPPPPHLSHEAHAGCLAFELSSGTSRIVINCGLPSTGRDNWRTFA HHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHH RSTVAHSTLTYHNTSSCTFVEMSAMKRLLHGAPIVSGPTRVENFREIVPDGTVLSTSHNG HHHHHHCEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCC YAAKFGLIHRRVLVAAEDGSRLDGEDTVTPAQGARLRGGGSDYTLRFHLHPAVKASRLSD CCHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCHHHCCCC GHGAMLVLPNREVWTFETFDDRVDLEDSVFLAGNDGPRRTTQLVIRQDAQQSPSIRWSFV CCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE RSSTSPSETNARRNARREPELPL ECCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA