| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ydfG [C]
Identifier: 146337441
GI number: 146337441
Start: 294001
End: 294780
Strand: Reverse
Name: ydfG [C]
Synonym: BRADO0281
Alternate gene names: 146337441
Gene position: 294780-294001 (Counterclockwise)
Preceding gene: 146337442
Following gene: 146337440
Centisome position: 3.95
GC content: 68.21
Gene sequence:
>780_bases GTGGGTGAAGGTGTCACGCTCGTAACAGGTGCGTCGTCGGGTATCGGGACCGAGCTGGCCCGCGTGTTCGCCGCCAATGG GCACCGTTTGGCGCTCACGGCGCGCCGCGAGGACCGCCTGGCTGCGCTCGCCGCCGAGATCAGCGCCAAAGGAGCCCCGG CGCCGCTCGTGATCCCCTGCGATCTGACCTCGCCCAACGCTGGCGCGACCATCGAGGCGGCGCTGTCGGCGGCTGGAGTC GAGCTGGAATATCTCGTCAACAATGCCGGCTTCGGCCTGTTCGGCAAGGCGGTGCAGCTCGACCGCACCGAGCAGCTCGA CATGATCGCGGTCAATGTGCGCGCGCTCACCGAGCTGTCGCTGCGCTTCTCCGACCAGCTGATCCGCAACAAGGGCGGCA TCCTCAATCTCGGCTCGGTGGCCGGCTTCCTGCCGGGACCGGGCATGGCGGTCTATTACGCCTCCAAGGCCTATGTGATC TCCTTCACCGAGGCGCTGCGCAAGGAGCTCGCGCCGCATGGCGTTCGCGTCACGGTGCTGTGCCCGGGGCCGGTGCCATC GGAGTTTCAGGACCGCGCCGGCTTCAAGCCCGGCGTCGATTCGGTGATCCTCAACGTGCCGCCGAAGGCGGTCGCCGAGG CCGGCTATCGTGGCCTGATGGCCGACAAGCGCGTCGTGCTGCCCGGAATCGGCATCAAGATCGTGCCGTTCCTGCTGCGC TGGTTTCCCCGGGGCTTCATCCTGGACGCGGTCGGCCGGCTGCAGCTCAAGCGCAGCTGA
Upstream 100 bases:
>100_bases GACAGGCTGCATTCTGCGGCAGCTTGCATGTTCCTGTCTGCCTATGCTCTCGTCCGCCGCGATCGGATAATGTTCAGAAT GTGATCAAAGAGCCGGGATC
Downstream 100 bases:
>100_bases CGTCCGGCGTCGCGCGTCGCGGTCGCGACATGACGGTCCCAGATGTCGGCTTTGTCTGCGGCGCATCGCACAGGCCCGAA ACGATACGAGATTCTTCGTG
Product: short chain dehydrogenase/reductase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MGEGVTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPCDLTSPNAGATIEAALSAAGV ELEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELSLRFSDQLIRNKGGILNLGSVAGFLPGPGMAVYYASKAYVI SFTEALRKELAPHGVRVTVLCPGPVPSEFQDRAGFKPGVDSVILNVPPKAVAEAGYRGLMADKRVVLPGIGIKIVPFLLR WFPRGFILDAVGRLQLKRS
Sequences:
>Translated_259_residues MGEGVTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPCDLTSPNAGATIEAALSAAGV ELEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELSLRFSDQLIRNKGGILNLGSVAGFLPGPGMAVYYASKAYVI SFTEALRKELAPHGVRVTVLCPGPVPSEFQDRAGFKPGVDSVILNVPPKAVAEAGYRGLMADKRVVLPGIGIKIVPFLLR WFPRGFILDAVGRLQLKRS >Mature_258_residues GEGVTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPCDLTSPNAGATIEAALSAAGVE LEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELSLRFSDQLIRNKGGILNLGSVAGFLPGPGMAVYYASKAYVIS FTEALRKELAPHGVRVTVLCPGPVPSEFQDRAGFKPGVDSVILNVPPKAVAEAGYRGLMADKRVVLPGIGIKIVPFLLRW FPRGFILDAVGRLQLKRS
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=182, Percent_Identity=31.8681318681319, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=32.2916666666667, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=31.7708333333333, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=32.8205128205128, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI226371731, Length=199, Percent_Identity=31.1557788944724, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=27.979274611399, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=27.0408163265306, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI5031737, Length=188, Percent_Identity=26.5957446808511, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI31542939, Length=188, Percent_Identity=31.9148936170213, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI38348362, Length=181, Percent_Identity=32.0441988950276, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=190, Percent_Identity=35.2631578947368, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=32.8042328042328, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=28.8770053475936, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI87082100, Length=182, Percent_Identity=31.3186813186813, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI2367365, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI2367175, Length=212, Percent_Identity=29.2452830188679, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI87082160, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=34.020618556701, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=34.8958333333333, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI193204405, Length=208, Percent_Identity=35.5769230769231, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=32.4468085106383, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=32.3383084577114, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562908, Length=250, Percent_Identity=29.2, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17531453, Length=211, Percent_Identity=29.8578199052133, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562990, Length=189, Percent_Identity=31.7460317460317, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=31.1557788944724, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17563726, Length=206, Percent_Identity=29.126213592233, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=206, Percent_Identity=32.0388349514563, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=29.7979797979798, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=29.6482412060301, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=29.8969072164948, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538480, Length=198, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555706, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI212646214, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=35.5, Blast_Score=86, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6322067, Length=207, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319635, Length=192, Percent_Identity=25.5208333333333, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=37.1134020618557, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=37.6288659793814, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=34.375, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=34.375, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=34.5360824742268, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=34.5360824742268, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=35.4166666666667, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=35.8974358974359, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24584752, Length=186, Percent_Identity=34.9462365591398, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24640442, Length=230, Percent_Identity=29.5652173913043, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24641388, Length=206, Percent_Identity=33.495145631068, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=30.6878306878307, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24639444, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=30.8457711442786, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27259; Mature: 27128
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEGVTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPC CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEC DLTSPNAGATIEAALSAAGVELEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELS CCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHH LRFSDQLIRNKGGILNLGSVAGFLPGPGMAVYYASKAYVISFTEALRKELAPHGVRVTVL HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHCCCCCEEEEEE CPGPVPSEFQDRAGFKPGVDSVILNVPPKAVAEAGYRGLMADKRVVLPGIGIKIVPFLLR ECCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH WFPRGFILDAVGRLQLKRS HCCCCCEEHHHCCEEEECC >Mature Secondary Structure GEGVTLVTGASSGIGTELARVFAANGHRLALTARREDRLAALAAEISAKGAPAPLVIPC CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEC DLTSPNAGATIEAALSAAGVELEYLVNNAGFGLFGKAVQLDRTEQLDMIAVNVRALTELS CCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHH LRFSDQLIRNKGGILNLGSVAGFLPGPGMAVYYASKAYVISFTEALRKELAPHGVRVTVL HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHCCCCCEEEEEE CPGPVPSEFQDRAGFKPGVDSVILNVPPKAVAEAGYRGLMADKRVVLPGIGIKIVPFLLR ECCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH WFPRGFILDAVGRLQLKRS HCCCCCEEHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA