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The map label for this gene is cph2 [H]

Identifier: 146337354

GI number: 146337354

Start: 197664

End: 199361

Strand: Direct

Name: cph2 [H]

Synonym: BRADO0187

Alternate gene names: 146337354

Gene position: 197664-199361 (Clockwise)

Preceding gene: 146337352

Following gene: 146337356

Centisome position: 2.65

GC content: 66.2

Gene sequence:

>1698_bases
ATGCCAAGCATCCGCTTCAATCGCAATAGAGTGAAGCTGAACCGGCTGATGGGGATCCGCGCGCGTCTGGCGCTGCTCGC
CCTGATCCTGGTGGCGCCGCTGATGCTGGAACGCGCCCGCTCGCTGGAAAGCGCCAGAACCCGGCAGATCGCGCTCGCCT
CCGAAGAATTCTTTGCCCTCGCCCGCCAAAGCGCCGACATGCAGCGCGAAGTCATCATGTCGGTGGAAACCGTGCTGAAG
TCGACGGCCTATGTCCGGGCCTCGGCCGCCGGCATCAGCCGCAGCTGCGACATGATGCGGGCCAGCCTGCCGACGACGCT
GCCCTGGATCCGCACCTTGATGATCGCCGGCCGCGACGGCCGCATCCAGTGCTCGACCAACAACCAATATGTCGGGCTCG
ATTTCAGCGACCGGCCTTATTTCCGTGGCGCCCAGGAGGCGCGCGACTTCGTCTTCAGCGACTATCTGCTGTCGAAGCCC
ACGCAGATGCCGATTGTGATGGCGGCCTATCCGGTCGGCGCGATCACCGGCGAGCCGGATGCGGTGATGCTGGCCAGCGT
GAACCTGGAATGGATGTCCAAGATCATGAGTAATCTTGGCGGCCGTCCGGGCATCACCGCGGTGCTGATCGACAGCGAGG
GAACCGTGCTGGCGGCGCCGGCCGATCGCACCGAGCTCATCGGACGTCCGCTCGACAGCGTGCCGTTGTTGTCGGCCGTC
GCCGAGACTGCGATGAGCTCGAGCAAACAATCGGACACGATGAGCTTCACGGCGGCCGACGGCTCGAAGCGCGCCATCAC
CTTCACCCGCATCACCGACACCGGATCGCGCCTGATCGTGAGCATCGACGAGACGCGCGTCACCGCCGCGATCGATCGCG
AGATCCGCAACGCCTATCTGCAGGCCGGCCTGGTCTGCCTGATGGTGCTCCTCGGTGCGCTGATCGCCGCCGAGAAGCTG
ATCGTGAAGCCGGTCAACATGCTCGCGGCCACCGCCAAGCGCTTCGGTCTTGGCCATTGGTCGGCGCGGGTCGCCACCAA
GCATCTGCCGTCGGAATTCGTGCCGCTGGCGAAGTCGTTCAATGCGATGGCCGCCAAGCTGGGCCAGCGCGAGCGCGAGC
TGGTGGCCGCCAACGACCGGCTCACGGTCATGGCGTCGATCGACATGCTCTCGGGCCTTGCCAACCGGCGCGGCTTCCAG
AACCGCATCGACGTCGAATGGGATCGCGCGCAGCAGACCGGGAGCGATCTGTCGCTCCTGATGATCGATGTCGACCATTT
CAAGCTCTACAACGACACCTATGGTCATCCCGAAGGTGACGCCTGCCTGTCGCGGCTCGGCGAGACGCTGGCGCAGATCG
CGGGCGCGACAACGGCCTTCGCCGGCCGCTACGGTGGCGAGGAATTCTGTCTGCTGCTCCCGGGCATGAGCGCCAGGCAG
GCGCTGGAGATCGGCGAGCTGGTCCGCGCCGCGGTGCTCGAGCTGGAGCTGCCGCATGCGACGTCCGTTCACCAATGCGT
CACCGTCAGCGTCGGGGTCGCGTCGACCCGGCCCAATGCGGCGCTGACACCCGCCGACCTGATCGAAGCGGCCGACGCCG
CGCTCTATGCCGCCAAGCATCGTGGTCGCAACACGGTCGTCGCGCATGGTTTCGGCGATGTCCTGGAGGCTGACAGTGAC
GTCGCACGCGCCGGCTGA

Upstream 100 bases:

>100_bases
GGTTCGGTAGATTTACGGGTTTGGCTGCAATTTTACGGAGTTCGAAAAAGGGTTCTTGAACCCTTCCCCTTACCCTGCTC
GCCGGGGGTAGGGGACAGAA

Downstream 100 bases:

>100_bases
GCCGGCACCGCGAAAGCCGGTCAGCCAACGGCCAGCTTGCGATCGAGCTCGAGCTCGGTCACCACGCGATTGCGGCCGAG
CTTCTTGGCCAGATACAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MPSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFALARQSADMQREVIMSVETVLK
STAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDGRIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKP
TQMPIVMAAYPVGAITGEPDAVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAV
AETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYLQAGLVCLMVLLGALIAAEKL
IVKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSFNAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQ
NRIDVEWDRAQQTGSDLSLLMIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQ
ALEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKHRGRNTVVAHGFGDVLEADSD
VARAG

Sequences:

>Translated_565_residues
MPSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFALARQSADMQREVIMSVETVLK
STAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDGRIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKP
TQMPIVMAAYPVGAITGEPDAVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAV
AETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYLQAGLVCLMVLLGALIAAEKL
IVKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSFNAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQ
NRIDVEWDRAQQTGSDLSLLMIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQ
ALEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKHRGRNTVVAHGFGDVLEADSD
VARAG
>Mature_564_residues
PSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFALARQSADMQREVIMSVETVLKS
TAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDGRIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKPT
QMPIVMAAYPVGAITGEPDAVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAVA
ETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYLQAGLVCLMVLLGALIAAEKLI
VKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSFNAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQN
RIDVEWDRAQQTGSDLSLLMIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQA
LEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKHRGRNTVVAHGFGDVLEADSDV
ARAG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=35.9116022099448, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=231, Percent_Identity=32.4675324675325, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=36.5714285714286, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=36, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI87082007, Length=132, Percent_Identity=39.3939393939394, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=205, Percent_Identity=32.1951219512195, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=34.5454545454545, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=32.9411764705882, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=31.7919075144509, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=29.6052631578947, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 61029; Mature: 60898

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
ARQSADMQREVIMSVETVLKSTAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCC
RIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKPTQMPIVMAAYPVGAITGEPD
EEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
AVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAV
EEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHHCCCCCCHHHHHHH
AETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYL
HHHHHHCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHH
QAGLVCLMVLLGALIAAEKLIVKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
NAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQNRIDVEWDRAQQTGSDLSLL
HHHHHHHCCHHHHHEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCEEE
MIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQ
EEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCHHH
ALEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKH
HHHHHHHHHHHHHHEECCCCCCCHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RGRNTVVAHGFGDVLEADSDVARAG
CCCCEEEECCCHHHHCCCCHHHCCC
>Mature Secondary Structure 
PSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
ARQSADMQREVIMSVETVLKSTAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCC
RIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKPTQMPIVMAAYPVGAITGEPD
EEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
AVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAV
EEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHHCCCCCCHHHHHHH
AETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYL
HHHHHHCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHH
QAGLVCLMVLLGALIAAEKLIVKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
NAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQNRIDVEWDRAQQTGSDLSLL
HHHHHHHCCHHHHHEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCEEE
MIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQ
EEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCHHH
ALEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKH
HHHHHHHHHHHHHHEECCCCCCCHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RGRNTVVAHGFGDVLEADSDVARAG
CCCCEEEECCCHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]