| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is yfeH [C]
Identifier: 146301577
GI number: 146301577
Start: 4547775
End: 4548713
Strand: Direct
Name: yfeH [C]
Synonym: Fjoh_3838
Alternate gene names: 146301577
Gene position: 4547775-4548713 (Clockwise)
Preceding gene: 146301575
Following gene: 146301580
Centisome position: 74.59
GC content: 42.81
Gene sequence:
>939_bases ATGATAGGCACCATGATCCTGCTGGCTTATTTTTTGCCGAAGCCGGGCATAATCAAAGAACCTGTTTCGCTGGAAGAGAT TGCCAATGCAGGTGTATCGTTGATTTTCTTTTTTTATGGCCTGCGCCTGAGTGTTGAGAAATTAAAAGCCGGACTTGCCA ACTTGAAAATGCACATTGTCGTTCAGTTCACAACCTTTTTGTTTTTTCCGCTTATCGTTTTGGCATTTCGCCCTTTGTTT ATCAACGCAGGTTTTGAGCTGCTTTGGCTGGGTGTATTCTTTCTGGCAGCTTTACCATCCACAGTTTCCTCTTCAGTGGT CATGGTTTCTATTGCTAAGGGCAACATTCCCGCAGCTATTTTCAATGCGAGTATTTCCAGTTTGATCGGAGTAATCGTTA CACCGCTCTGGGTTGGATTGTTCATAGCTTCTGCAACAGGCGATTTTGATGTCACTGATATCGTAATAAAGTTGGTTTTT CAAGTCTTATTGCCTGTCATCATTGGCATCAGCCTCAACTCTCGTTTTGGAGCCATTGCTGAAAAATACAAGAAACAGCT CAAATATTTCGACCAGGCTATCATCCTTACCATCATTTACACATCGTTTTGTAAGTCATTCACACAACATCTTTTCGAAG GTTTCACAGCCCTTGAGCTTGCGGGACTCGCTGCAGGAATGATGGTCTTGTTTTTTGCCGTATTCCTTTGTGTCGGGCTT CTCAGCCGCTTACTTGGTTTTTCGGATGAAGATCGTATTACGGTTTTATTTTGCGGATCTAAAAAGTCGTTGGTACACGG CACCGTCATGTCAAAAGTGCTTTTTCAGCACAGTACTATCACCGGTATCGTATTGTTGCCGCTTATGATTTATCATGCCT TGCAATTGATTGCTGCAAGTATCATCGCTCAGGGTATGGCTCGACGAAAAAAAGTATAA
Upstream 100 bases:
>100_bases CAAAATATACTTTTGCAGTATAAAAATCTATTAAAATAAGAGCACATTGAAAAAGTTATTAGAAGTATTAAGTAAAGCAG GTTTCGACGGTTTCCTGTTA
Downstream 100 bases:
>100_bases TTTTAAGAGCCAGTTGTTAGTCCGTAGAGTATCTTAACTCTACGGACAGAGGGAGTTAAAAAAAAAGCTCCATTTTATAA TTAATACATTGAATTAAACA
Product: Na+-dependent transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MIGTMILLAYFLPKPGIIKEPVSLEEIANAGVSLIFFFYGLRLSVEKLKAGLANLKMHIVVQFTTFLFFPLIVLAFRPLF INAGFELLWLGVFFLAALPSTVSSSVVMVSIAKGNIPAAIFNASISSLIGVIVTPLWVGLFIASATGDFDVTDIVIKLVF QVLLPVIIGISLNSRFGAIAEKYKKQLKYFDQAIILTIIYTSFCKSFTQHLFEGFTALELAGLAAGMMVLFFAVFLCVGL LSRLLGFSDEDRITVLFCGSKKSLVHGTVMSKVLFQHSTITGIVLLPLMIYHALQLIAASIIAQGMARRKKV
Sequences:
>Translated_312_residues MIGTMILLAYFLPKPGIIKEPVSLEEIANAGVSLIFFFYGLRLSVEKLKAGLANLKMHIVVQFTTFLFFPLIVLAFRPLF INAGFELLWLGVFFLAALPSTVSSSVVMVSIAKGNIPAAIFNASISSLIGVIVTPLWVGLFIASATGDFDVTDIVIKLVF QVLLPVIIGISLNSRFGAIAEKYKKQLKYFDQAIILTIIYTSFCKSFTQHLFEGFTALELAGLAAGMMVLFFAVFLCVGL LSRLLGFSDEDRITVLFCGSKKSLVHGTVMSKVLFQHSTITGIVLLPLMIYHALQLIAASIIAQGMARRKKV >Mature_312_residues MIGTMILLAYFLPKPGIIKEPVSLEEIANAGVSLIFFFYGLRLSVEKLKAGLANLKMHIVVQFTTFLFFPLIVLAFRPLF INAGFELLWLGVFFLAALPSTVSSSVVMVSIAKGNIPAAIFNASISSLIGVIVTPLWVGLFIASATGDFDVTDIVIKLVF QVLLPVIIGISLNSRFGAIAEKYKKQLKYFDQAIILTIIYTSFCKSFTQHLFEGFTALELAGLAAGMMVLFFAVFLCVGL LSRLLGFSDEDRITVLFCGSKKSLVHGTVMSKVLFQHSTITGIVLLPLMIYHALQLIAASIIAQGMARRKKV
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=309, Percent_Identity=30.42071197411, Blast_Score=117, Evalue=1e-26, Organism=Escherichia coli, GI1788749, Length=311, Percent_Identity=33.4405144694534, Blast_Score=150, Evalue=9e-38, Organism=Saccharomyces cerevisiae, GI6323677, Length=349, Percent_Identity=24.6418338108883, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 34100; Mature: 34100
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGTMILLAYFLPKPGIIKEPVSLEEIANAGVSLIFFFYGLRLSVEKLKAGLANLKMHIV CHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQFTTFLFFPLIVLAFRPLFINAGFELLWLGVFFLAALPSTVSSSVVMVSIAKGNIPAAI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHH FNASISSLIGVIVTPLWVGLFIASATGDFDVTDIVIKLVFQVLLPVIIGISLNSRFGAIA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH EKYKKQLKYFDQAIILTIIYTSFCKSFTQHLFEGFTALELAGLAAGMMVLFFAVFLCVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRLLGFSDEDRITVLFCGSKKSLVHGTVMSKVLFQHSTITGIVLLPLMIYHALQLIAAS HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIAQGMARRKKV HHHHHHHHHCCC >Mature Secondary Structure MIGTMILLAYFLPKPGIIKEPVSLEEIANAGVSLIFFFYGLRLSVEKLKAGLANLKMHIV CHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQFTTFLFFPLIVLAFRPLFINAGFELLWLGVFFLAALPSTVSSSVVMVSIAKGNIPAAI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHH FNASISSLIGVIVTPLWVGLFIASATGDFDVTDIVIKLVFQVLLPVIIGISLNSRFGAIA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH EKYKKQLKYFDQAIILTIIYTSFCKSFTQHLFEGFTALELAGLAAGMMVLFFAVFLCVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRLLGFSDEDRITVLFCGSKKSLVHGTVMSKVLFQHSTITGIVLLPLMIYHALQLIAAS HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIAQGMARRKKV HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]