BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is yqjQ [H]

Identifier: 146301533

GI number: 146301533

Start: 4498535

End: 4499323

Strand: Direct

Name: yqjQ [H]

Synonym: Fjoh_3794

Alternate gene names: 146301533

Gene position: 4498535-4499323 (Clockwise)

Preceding gene: 146301531

Following gene: 146301534

Centisome position: 73.78

GC content: 37.26

Gene sequence:

>789_bases
ATGAGCGATACAACTAAACCGTATGCCTTGATAACCGGCGCCAGTAAAGGAATTGGAAAATCTATCGCTCATGAATTAGC
TAAACAGGGTTATCCATTGCTGCTTGCCGCAAGAAGTGATCAGGAATTGAAAGCATTATCTGATGATCTTGAAGTTAAGT
ATAACATCGATATTTTTTATTTATCGATTGATCTTTCAATAAATGGCGCATCACAAAAAATAACCAATTGGATAAAAAGT
AATAACTATCCGGTTGCAGTTCTAGTTAATAATGCCGGATATGGGGTGTGGGGTGATTTTAGTGCATCTTCCCTAAACGA
TCAGCTTGGCATGATGCAGCTCAACATGAACGTAGTGGTTGAACTTTCACATTTATTAGTACCCATACTTTCACAACAAA
AACAAGCCTATATTTTAAATATATCGAGTACTGCTGCATATCAAGCTGTACCTACTCTGGCTGTTTATTCGGCTACTAAG
GCTTTTGTTTTATCATTTACCCGTGCCTTACGTTTCGAGCTTGCCCAAACTTCAATTTCAGTAACCTGTTTTAGTCCGGG
TCCGGTTGATACTGGTTTTGCTGCAAGAGCTGGTTTAAGTGCTTTAAACAAAATGGCTGAAAAGTTTAATATGCAGCCTG
ATGAAGTTGCAAAAATGGCAGTAAAAGCTATGTTCAGCAAAAAATCAGAAGTTATTCCGGGTTTTACTAATATCATTTCG
GTTTATGCCAATCGTATACTGCCAAAGGCTTTTATAGAAAAAACCGCTGCTGGAATTTATAAAATTTAA

Upstream 100 bases:

>100_bases
ATTCATCTTCAAGAGCCCCTTAAAGAATAAATCAAAGCATTTTATTAATCTCCTATAGTTTAAAATTAATCTTTATATTT
GATTACCAAAATTAATACAA

Downstream 100 bases:

>100_bases
TTTTTTTCAAAAAAAATCAAAAAAATATTCTTTGCAAAAGAAAAATTATAGTAAGTTTGTATAAAATTCTACTAATTCTA
TAGAGTATGTCAAATAAAAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSDTTKPYALITGASKGIGKSIAHELAKQGYPLLLAARSDQELKALSDDLEVKYNIDIFYLSIDLSINGASQKITNWIKS
NNYPVAVLVNNAGYGVWGDFSASSLNDQLGMMQLNMNVVVELSHLLVPILSQQKQAYILNISSTAAYQAVPTLAVYSATK
AFVLSFTRALRFELAQTSISVTCFSPGPVDTGFAARAGLSALNKMAEKFNMQPDEVAKMAVKAMFSKKSEVIPGFTNIIS
VYANRILPKAFIEKTAAGIYKI

Sequences:

>Translated_262_residues
MSDTTKPYALITGASKGIGKSIAHELAKQGYPLLLAARSDQELKALSDDLEVKYNIDIFYLSIDLSINGASQKITNWIKS
NNYPVAVLVNNAGYGVWGDFSASSLNDQLGMMQLNMNVVVELSHLLVPILSQQKQAYILNISSTAAYQAVPTLAVYSATK
AFVLSFTRALRFELAQTSISVTCFSPGPVDTGFAARAGLSALNKMAEKFNMQPDEVAKMAVKAMFSKKSEVIPGFTNIIS
VYANRILPKAFIEKTAAGIYKI
>Mature_261_residues
SDTTKPYALITGASKGIGKSIAHELAKQGYPLLLAARSDQELKALSDDLEVKYNIDIFYLSIDLSINGASQKITNWIKSN
NYPVAVLVNNAGYGVWGDFSASSLNDQLGMMQLNMNVVVELSHLLVPILSQQKQAYILNISSTAAYQAVPTLAVYSATKA
FVLSFTRALRFELAQTSISVTCFSPGPVDTGFAARAGLSALNKMAEKFNMQPDEVAKMAVKAMFSKKSEVIPGFTNIISV
YANRILPKAFIEKTAAGIYKI

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4557649, Length=239, Percent_Identity=26.7782426778243, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7705855, Length=195, Percent_Identity=31.7948717948718, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI226371731, Length=192, Percent_Identity=29.6875, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=257, Percent_Identity=26.8482490272374, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7706318, Length=185, Percent_Identity=31.3513513513514, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI109715829, Length=228, Percent_Identity=30.7017543859649, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI4503817, Length=223, Percent_Identity=28.6995515695067, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI210032110, Length=247, Percent_Identity=24.2914979757085, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI142976729, Length=255, Percent_Identity=25.8823529411765, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI40254992, Length=181, Percent_Identity=28.1767955801105, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI7657478, Length=208, Percent_Identity=28.8461538461538, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=28.7292817679558, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786701, Length=261, Percent_Identity=26.4367816091954, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=181, Percent_Identity=29.8342541436464, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=29.1891891891892, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=28.0487804878049, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=28.0442804428044, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=232, Percent_Identity=28.0172413793103, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=257, Percent_Identity=26.0700389105058, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=246, Percent_Identity=28.0487804878049, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17557668, Length=256, Percent_Identity=26.953125, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI212646214, Length=197, Percent_Identity=27.4111675126904, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=214, Percent_Identity=31.3084112149533, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=203, Percent_Identity=29.064039408867, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559552, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=212, Percent_Identity=27.8301886792453, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=245, Percent_Identity=26.9387755102041, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=239, Percent_Identity=24.6861924686192, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=219, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=232, Percent_Identity=27.1551724137931, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=244, Percent_Identity=24.5901639344262, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=29.3172690763052, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=234, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=27.3076923076923, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=183, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=241, Percent_Identity=31.5352697095436, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319635, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21358495, Length=233, Percent_Identity=32.618025751073, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=30.8510638297872, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=30.8510638297872, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24584744, Length=199, Percent_Identity=29.6482412060301, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI28574402, Length=199, Percent_Identity=29.6482412060301, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=32.9842931937173, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI28571526, Length=199, Percent_Identity=31.6582914572864, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24651139, Length=272, Percent_Identity=29.0441176470588, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=31.7708333333333, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21357041, Length=228, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=27.1428571428571, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24584752, Length=190, Percent_Identity=29.4736842105263, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355319, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648944, Length=226, Percent_Identity=29.646017699115, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28407; Mature: 28276

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTTKPYALITGASKGIGKSIAHELAKQGYPLLLAARSDQELKALSDDLEVKYNIDIFY
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCEEEEEEEEEE
LSIDLSINGASQKITNWIKSNNYPVAVLVNNAGYGVWGDFSASSLNDQLGMMQLNMNVVV
EEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCCEEEECHHHEE
ELSHLLVPILSQQKQAYILNISSTAAYQAVPTLAVYSATKAFVLSFTRALRFELAQTSIS
EHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VTCFSPGPVDTGFAARAGLSALNKMAEKFNMQPDEVAKMAVKAMFSKKSEVIPGFTNIIS
EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VYANRILPKAFIEKTAAGIYKI
HHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDTTKPYALITGASKGIGKSIAHELAKQGYPLLLAARSDQELKALSDDLEVKYNIDIFY
CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCEEEEEEEEEE
LSIDLSINGASQKITNWIKSNNYPVAVLVNNAGYGVWGDFSASSLNDQLGMMQLNMNVVV
EEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCCEEEECHHHEE
ELSHLLVPILSQQKQAYILNISSTAAYQAVPTLAVYSATKAFVLSFTRALRFELAQTSIS
EHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VTCFSPGPVDTGFAARAGLSALNKMAEKFNMQPDEVAKMAVKAMFSKKSEVIPGFTNIIS
EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VYANRILPKAFIEKTAAGIYKI
HHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]