| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301396
Identifier: 146301396
GI number: 146301396
Start: 4344952
End: 4346196
Strand: Direct
Name: 146301396
Synonym: Fjoh_3654
Alternate gene names: NA
Gene position: 4344952-4346196 (Clockwise)
Preceding gene: 146301395
Following gene: 146301397
Centisome position: 71.27
GC content: 34.78
Gene sequence:
>1245_bases ATGGTTGCAGTCATAAAAACCAGCCGTTCCATAAACAGCATTCTGAATTACAATGAAAACAAAGTTAAGGAAGGAGTTGC TGAGTGCATCAGTGCCGTGAACTATCCTCTTAAATTAGAGAATTTAAACTTTACCCATAAGCTGAACCGCTTTTTAAAAC TGTCATCATTGAATCAAAATGCAAAGCGGAACAGCGTTCATATTTCACTCAACTTTGATCCTTCGGAAAATCATTCTAAA GAAAAGCTGATTGAAATTGCAGAAACTTATATGGAAAAAATAGGTTTTGGAAGACAGCCCTATTTAGTGTATCAGCACCA TGATGCAGGGCATCCGCACCTGCATTTGGTCACAAACAATATTCAAAGAGACGGGAAAAGAATTGATCTGCATCTGATAG GCGTTAAAAAATCAGAGACTGCAAGAAAAGAGATAGAAGAAATTTTCGGACTGGTAAAAGCTGAAGGAAGAAAGCAGAAA AAAGATTTCTCTTTAAAGCCGATAGATGTAGGCAAAATTCAATACGGAAAGGTAGAGTCTAGGAAGGCGATCAATTCAGT TTTAAACAAAATTCTATTTGAGTATAAATATTCTAGCCTGCCTGAACTCAATGCAGTTTTAAACCTTTACAATGTTCATG CCGACAGAGGAAGCGAAGAATCGAGAGTTTTTAAAAATTACGGACTTCTTTACAAGATACTTGACCAGAATTCAAAGCCG ATTGGAGTGCCCATAAAAGCAAGCGAATTCTACAGCAGGCCTACCTTAAAATTTCTGGAAGGAAAGTTTAAAACTAATGA AGTGCAGAAAGAATCATCCAAAAGGCATGTAAAGAATGCCATAAAACTAGCTTTTATTCGTGAAAACATATTTTCGCCCG AAAAATTATCCAAGATATTGGAACAAGAAAGCATTCATATGATATTAAGAAAAAGCAATGAAGGACAGCTTTACGGAATA ACCTATGTTGACCATAAAACCAGATCCGTCTTCAACGGAAGCAGTCTGGGGAAAGAATTCAGTGCAAAAGGAATTCAGGA GAGCTGTGCTATGAATATTCTTGAACTTGAAAGAAAGCATCAAAATTCTGTTTCAACAAATTCTGAGAATTTTCAAGATA TTGAATCGAAAAAGTATGTAAAAGAAAATCTTGTTGATATACTTTTTCGTGGGGAAAAAGTATATGATTATATTTCAGAA CAAATCAAACGAACAAAAAGAAAAAAAATACATAGAAAAATATAA
Upstream 100 bases:
>100_bases CCGACTTCAAAGGGCATCTGTATCTGTTTGAAGTGCAGAGAAAAAAGCTTTCTGATAAAATGGAAGAAATTTCAAGCCAC ACCCAAAAAATATCGGAACA
Downstream 100 bases:
>100_bases AATCTTTAATTACGGAAAACCGTATTTATATGACAATTTATAGTATTAATTTTATTTTAAAATAACCAATATTAAAATTT TAATAACAAGTATAAATACT
Product: relaxase/mobilization nuclease family protein
Products: NA
Alternate protein names: Relaxase/Mobilization Nuclease Family Protein; MobB Protein; Mobilisation Protein; Relaxase/Mobilization Nuclease Domain Protein
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MVAVIKTSRSINSILNYNENKVKEGVAECISAVNYPLKLENLNFTHKLNRFLKLSSLNQNAKRNSVHISLNFDPSENHSK EKLIEIAETYMEKIGFGRQPYLVYQHHDAGHPHLHLVTNNIQRDGKRIDLHLIGVKKSETARKEIEEIFGLVKAEGRKQK KDFSLKPIDVGKIQYGKVESRKAINSVLNKILFEYKYSSLPELNAVLNLYNVHADRGSEESRVFKNYGLLYKILDQNSKP IGVPIKASEFYSRPTLKFLEGKFKTNEVQKESSKRHVKNAIKLAFIRENIFSPEKLSKILEQESIHMILRKSNEGQLYGI TYVDHKTRSVFNGSSLGKEFSAKGIQESCAMNILELERKHQNSVSTNSENFQDIESKKYVKENLVDILFRGEKVYDYISE QIKRTKRKKIHRKI
Sequences:
>Translated_414_residues MVAVIKTSRSINSILNYNENKVKEGVAECISAVNYPLKLENLNFTHKLNRFLKLSSLNQNAKRNSVHISLNFDPSENHSK EKLIEIAETYMEKIGFGRQPYLVYQHHDAGHPHLHLVTNNIQRDGKRIDLHLIGVKKSETARKEIEEIFGLVKAEGRKQK KDFSLKPIDVGKIQYGKVESRKAINSVLNKILFEYKYSSLPELNAVLNLYNVHADRGSEESRVFKNYGLLYKILDQNSKP IGVPIKASEFYSRPTLKFLEGKFKTNEVQKESSKRHVKNAIKLAFIRENIFSPEKLSKILEQESIHMILRKSNEGQLYGI TYVDHKTRSVFNGSSLGKEFSAKGIQESCAMNILELERKHQNSVSTNSENFQDIESKKYVKENLVDILFRGEKVYDYISE QIKRTKRKKIHRKI >Mature_414_residues MVAVIKTSRSINSILNYNENKVKEGVAECISAVNYPLKLENLNFTHKLNRFLKLSSLNQNAKRNSVHISLNFDPSENHSK EKLIEIAETYMEKIGFGRQPYLVYQHHDAGHPHLHLVTNNIQRDGKRIDLHLIGVKKSETARKEIEEIFGLVKAEGRKQK KDFSLKPIDVGKIQYGKVESRKAINSVLNKILFEYKYSSLPELNAVLNLYNVHADRGSEESRVFKNYGLLYKILDQNSKP IGVPIKASEFYSRPTLKFLEGKFKTNEVQKESSKRHVKNAIKLAFIRENIFSPEKLSKILEQESIHMILRKSNEGQLYGI TYVDHKTRSVFNGSSLGKEFSAKGIQESCAMNILELERKHQNSVSTNSENFQDIESKKYVKENLVDILFRGEKVYDYISE QIKRTKRKKIHRKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47826; Mature: 47826
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVIKTSRSINSILNYNENKVKEGVAECISAVNYPLKLENLNFTHKLNRFLKLSSLNQN CEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCC AKRNSVHISLNFDPSENHSKEKLIEIAETYMEKIGFGRQPYLVYQHHDAGHPHLHLVTNN CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECC IQRDGKRIDLHLIGVKKSETARKEIEEIFGLVKAEGRKQKKDFSLKPIDVGKIQYGKVES HHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCHH RKAINSVLNKILFEYKYSSLPELNAVLNLYNVHADRGSEESRVFKNYGLLYKILDQNSKP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHEEEECCCCCC IGVPIKASEFYSRPTLKFLEGKFKTNEVQKESSKRHVKNAIKLAFIRENIFSPEKLSKIL CCCEEEHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH EQESIHMILRKSNEGQLYGITYVDHKTRSVFNGSSLGKEFSAKGIQESCAMNILELERKH HHHHHHEEEEECCCCCEEEEEEECCCHHHHCCCHHCCHHHHHCCHHHHHHHHHHHHHHHH QNSVSTNSENFQDIESKKYVKENLVDILFRGEKVYDYISEQIKRTKRKKIHRKI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVAVIKTSRSINSILNYNENKVKEGVAECISAVNYPLKLENLNFTHKLNRFLKLSSLNQN CEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCC AKRNSVHISLNFDPSENHSKEKLIEIAETYMEKIGFGRQPYLVYQHHDAGHPHLHLVTNN CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECC IQRDGKRIDLHLIGVKKSETARKEIEEIFGLVKAEGRKQKKDFSLKPIDVGKIQYGKVES HHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCHH RKAINSVLNKILFEYKYSSLPELNAVLNLYNVHADRGSEESRVFKNYGLLYKILDQNSKP HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHEEEECCCCCC IGVPIKASEFYSRPTLKFLEGKFKTNEVQKESSKRHVKNAIKLAFIRENIFSPEKLSKIL CCCEEEHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH EQESIHMILRKSNEGQLYGITYVDHKTRSVFNGSSLGKEFSAKGIQESCAMNILELERKH HHHHHHEEEEECCCCCEEEEEEECCCHHHHCCCHHCCHHHHHCCHHHHHHHHHHHHHHHH QNSVSTNSENFQDIESKKYVKENLVDILFRGEKVYDYISEQIKRTKRKKIHRKI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA