| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300998
Identifier: 146300998
GI number: 146300998
Start: 3892562
End: 3894397
Strand: Reverse
Name: 146300998
Synonym: Fjoh_3254
Alternate gene names: NA
Gene position: 3894397-3892562 (Counterclockwise)
Preceding gene: 146300999
Following gene: 146300997
Centisome position: 63.88
GC content: 33.44
Gene sequence:
>1836_bases ATGAGACAAGATCGAATAAAAGACAGAGTGCTAAAAAGAGCGGCTAGATCATGGGGCTTTTCTGATGTTGAGATGGAAAC ATCATTTGATCCTGTTGTATCAATGATGCTTAATGCATTGTCTTACGAATTAGAAAAAGTAGCCCACGAACTCGAAGACT CTAAAACAAGAGTTGTAGAAAGAGTTCTGGAAATTATGTTTCCTGAAGTTACAGCAGGAGTAAAACCTGCACGAGCCATT TTACATGCTTTACCAATAGAGAATGGTATGAAAGTTTCATTGCAGAACCAAATGTCGGCAAGTCGAAGAATTCATAATAT TTACAATCCTTTAGCACCAATTACTAAAGAGATCGCTTTATCGCCAACGTTAGAAGTAAAGCTGTCTTCGGCAGAAATAA AATATGTAGCTTATGAACGCAATTTGTTCGAAATTTCGAATCTTTTTTATAAAGATGCCATACGAGATTACAAACATTCA CTGCCTTCAGGTGTTGTGTTCTTAGGAATTGAATTAACGAATCCGAAAGTTGAAGAGATAGAAGATTTAATGTTGTATAT CGACATTAAAAATACACATCAGAAAGAGATGTTTCATTACTATTTAAAGCAAATGAAATGCTTTCAGGATGATGTGCAGA TTACAGTAGAAGAAGGCTATAATGTTCCTGTAAACAATATAGACATTGAGAATATTATCAACCGTAATTACACACATTTG AGTGAAATTATGCAGGAGGTAAATGAATTTTATTTTGATAATTTCTATACCCTGAAAGGTTCTTTAAAGCACAAAGCAAT TAATGAATACAGTGAAGAATATAAATATTTTGAAGCTGTAACCAGCGGAAATGACAATCCTATTATTTGGGTAAAAATGA TTTTCCCGGAATCGCTGATTCCTCAAATATTAGATAACGTTTCTTTTACAGCAAATTGCTTTCCGGTAATCAACAAAAAG AAACACATTATAAATAAAACGCTTGGTAACTTCTTATCCTATATTGCATTAGAAACAGATAACAATATTTATCTCGATGT TGACACTGTTATCGATGGATTCAATAATCATTATGAGATAAAAGAATTTAAAGATGGTGTAATTGAAGAAGGAAATGCTG TATTACGAACAGGCGGAGTTTCCAGATTCGATTCAAGAAGCGCATCAGAATTGCTTCAAAATGTATTAGACTTACTAAAA GACGAAAGTTCTTCTTTTGCTGGTTTAGGTAAAGATTTTATGAACAGCTCTTTAGTCGAAATCAATCAGCTCTTAGCTTC TGTAGAACAGCAGGCAAGAGAAAGCAGCTTTTCTAAAAATAATGATCCTTATTTAATGATTAAGCCAAAGTTTGATGAAT CTATAGGAAAATCATTTTCTATACATTACTGGTCAACATGTGCCGAAGAAGGAAACGATATAAAAGCAGGAACAGTTTTA GAGGCCAAAGATGACATGCTTTTTGTAAGCAAAGAGTCGGTGCTGATTACAAATACTGTTGGCGGTATGAACAAACAGAA TAACAAAGACCGTATTTTAGCGTACAGAAATGCTTTGCTGACACGCGGCCGAATTGTAACATTTGCTGATATAAAAGCTT TTGGATTTAATCATTTCAAAAGTTGTATAACAGACATTAGAATAGAAAAAGGCACGCGAAAAGAAATATCTGTAAAAGCT GGTTTCAGTCGTACAGTAGATATTCATCTGCAGGTAAACCCTGTTGAAAAAGATTATTTATCAGAAACAGAATGGGATTA TTTATGCGATAGTTTTATGAAACAGCTCAAAAACAGATCCTCAAATGTGTTTCCTTATCGAATATTTGTAAATTAA
Upstream 100 bases:
>100_bases CAGATACTATTGTTACAGTTCGCTCACAACATGGCGAAAATTTAAAGTATAGATTTATTAGAAAAGAATCTGACACATTG TATATGCAAAGAATAAAAAA
Downstream 100 bases:
>100_bases AAAAAACGCTTCTCAATCGAGAAGCGTTTTTTTTTGTTATTTTCTTTAATATACTCTCTCAATATTTTTTTCATCGAAAG AAATGCCGTCACAATTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 611; Mature: 611
Protein sequence:
>611_residues MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVERVLEIMFPEVTAGVKPARAI LHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIALSPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHS LPSGVVFLGIELTNPKVEEIEDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLIPQILDNVSFTANCFPVINKK KHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEIKEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLK DESSSFAGLGKDFMNSSLVEINQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFKSCITDIRIEKGTRKEISVKA GFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRSSNVFPYRIFVN
Sequences:
>Translated_611_residues MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVERVLEIMFPEVTAGVKPARAI LHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIALSPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHS LPSGVVFLGIELTNPKVEEIEDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLIPQILDNVSFTANCFPVINKK KHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEIKEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLK DESSSFAGLGKDFMNSSLVEINQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFKSCITDIRIEKGTRKEISVKA GFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRSSNVFPYRIFVN >Mature_611_residues MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVERVLEIMFPEVTAGVKPARAI LHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIALSPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHS LPSGVVFLGIELTNPKVEEIEDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLIPQILDNVSFTANCFPVINKK KHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEIKEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLK DESSSFAGLGKDFMNSSLVEINQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFKSCITDIRIEKGTRKEISVKA GFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRSSNVFPYRIFVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70190; Mature: 70190
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVE CCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVLEIMFPEVTAGVKPARAILHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIAL HHHHHHCHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHC SPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHSLPSGVVFLGIELTNPKVEEI CCCEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH EDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL CEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCHHHH SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLI HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH PQILDNVSFTANCFPVINKKKHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEI HHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEHHHHCCCCCCEEH KEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLKDESSSFAGLGKDFMNSSLVE HHHHCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHCCHHHH INQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCEEEEEHHHHHCCCCCCCCCEEE EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFK ECCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCHHHHH SCITDIRIEKGTRKEISVKAGFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRS HHHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCC SNVFPYRIFVN CCCCEEEEEEC >Mature Secondary Structure MRQDRIKDRVLKRAARSWGFSDVEMETSFDPVVSMMLNALSYELEKVAHELEDSKTRVVE CCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVLEIMFPEVTAGVKPARAILHALPIENGMKVSLQNQMSASRRIHNIYNPLAPITKEIAL HHHHHHCHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHC SPTLEVKLSSAEIKYVAYERNLFEISNLFYKDAIRDYKHSLPSGVVFLGIELTNPKVEEI CCCEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH EDLMLYIDIKNTHQKEMFHYYLKQMKCFQDDVQITVEEGYNVPVNNIDIENIINRNYTHL CEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCHHHH SEIMQEVNEFYFDNFYTLKGSLKHKAINEYSEEYKYFEAVTSGNDNPIIWVKMIFPESLI HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH PQILDNVSFTANCFPVINKKKHIINKTLGNFLSYIALETDNNIYLDVDTVIDGFNNHYEI HHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEHHHHCCCCCCEEH KEFKDGVIEEGNAVLRTGGVSRFDSRSASELLQNVLDLLKDESSSFAGLGKDFMNSSLVE HHHHCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHCCHHHH INQLLASVEQQARESSFSKNNDPYLMIKPKFDESIGKSFSIHYWSTCAEEGNDIKAGTVL HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCEEEEEHHHHHCCCCCCCCCEEE EAKDDMLFVSKESVLITNTVGGMNKQNNKDRILAYRNALLTRGRIVTFADIKAFGFNHFK ECCCCEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCHHHHH SCITDIRIEKGTRKEISVKAGFSRTVDIHLQVNPVEKDYLSETEWDYLCDSFMKQLKNRS HHHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCC SNVFPYRIFVN CCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA