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The map label for this gene is rpoE [C]

Identifier: 146300997

GI number: 146300997

Start: 3891596

End: 3892153

Strand: Reverse

Name: rpoE [C]

Synonym: Fjoh_3253

Alternate gene names: 146300997

Gene position: 3892153-3891596 (Counterclockwise)

Preceding gene: 146300998

Following gene: 146300996

Centisome position: 63.84

GC content: 32.26

Gene sequence:

>558_bases
ATGTATAAAGGATATACAGACGAACAACTTGTCGAATTATTAAAAAAAGGTAAAGACAAAGCATTTGATGAATTGTACTT
TCGATATAGAGATTTACTGGTTCGGTTTGTTTATGCAAGAATGAAATCGGTTCCAATATCAGAAGAAATTGTTCAGGAAG
TTTTTACCACAATTTGGGAACGACGTACGACAATTCTAATTCAAAAAAGTTTTATGGCATACATTTATACTTCAGTACGT
TACAAAACTTTAGATTATATAAAATCGCATTCTGTTACAGATCAGTACATACAGGAAGTTCTGGACAGAAATACCGTTAC
TCAAACTTATACTAATACTACAGAAGACTCTATTTACTATGAAGAGCTTCAGGATGCGGTTGACAAAGCTGCAGACTTAC
TTCCCAAAAAAGCAAAAGAGGTTTTTATTCTAAGCCGCATCAAACATTATTCTAATAAAGAAATTGCCGAAGAACTAAAC
GTCTCCATCGAAACAGTAAAGTATCATATAACCTATGCATTGAAATTTATGCGGACTTATTTAGGTGAATTTAATTGA

Upstream 100 bases:

>100_bases
ATGTCATTCTTTAAAATTAAAAAACACCGTAAGAAAACTCTCCGCACAAGTTTTTCAGCCCCTATTTTTTTGCCCATCAA
TAATTCAAAAGTGAAGTATT

Downstream 100 bases:

>100_bases
TACAAATTCTCGGACTCTAATCCAGTCAATTTTTCTTAACACAAGCGTAACCTGATGCGCCTACCCAAAATTTCAATTTC
CAAGACATACTATTAAAGAC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MYKGYTDEQLVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWERRTTILIQKSFMAYIYTSVR
YKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYYEELQDAVDKAADLLPKKAKEVFILSRIKHYSNKEIAEELN
VSIETVKYHITYALKFMRTYLGEFN

Sequences:

>Translated_185_residues
MYKGYTDEQLVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWERRTTILIQKSFMAYIYTSVR
YKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYYEELQDAVDKAADLLPKKAKEVFILSRIKHYSNKEIAEELN
VSIETVKYHITYALKFMRTYLGEFN
>Mature_185_residues
MYKGYTDEQLVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWERRTTILIQKSFMAYIYTSVR
YKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYYEELQDAVDKAADLLPKKAKEVFILSRIKHYSNKEIAEELN
VSIETVKYHITYALKFMRTYLGEFN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22139; Mature: 22139

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKGYTDEQLVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWE
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RRTTILIQKSFMAYIYTSVRYKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCCCCCHHHHH
EELQDAVDKAADLLPKKAKEVFILSRIKHYSNKEIAEELNVSIETVKYHITYALKFMRTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGEFN
HCCCC
>Mature Secondary Structure
MYKGYTDEQLVELLKKGKDKAFDELYFRYRDLLVRFVYARMKSVPISEEIVQEVFTTIWE
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RRTTILIQKSFMAYIYTSVRYKTLDYIKSHSVTDQYIQEVLDRNTVTQTYTNTTEDSIYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCCCCCHHHHH
EELQDAVDKAADLLPKKAKEVFILSRIKHYSNKEIAEELNVSIETVKYHITYALKFMRTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGEFN
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA