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The map label for this gene is ypdB [C]

Identifier: 146300974

GI number: 146300974

Start: 3848839

End: 3849591

Strand: Reverse

Name: ypdB [C]

Synonym: Fjoh_3229

Alternate gene names: 146300974

Gene position: 3849591-3848839 (Counterclockwise)

Preceding gene: 146300975

Following gene: 146300973

Centisome position: 63.14

GC content: 35.72

Gene sequence:

>753_bases
ATGAGAATTTTGATTATTGAAGATGAGAGTATTAATGCCAGCCGGCTCAAAAGACTGTTAGAAGAATTAGAACCCAATTG
CGAGATTCTTGATATTATTGATACAGTCGAAGGTGCTGTAAAATGGCTGAAATCTAACGAAAAACCGGATTTAATTACAA
TGGATATTCGTCTGGCAGACGGAATCAGTTTTTCAATTTTCGAAGAAATAAAAATTTCCAGTCCCGTTATATTCACTACA
GCATACGATGAATATGCAGTTCGGGCTTTTAAAGTCAACAGCATCGATTATTTGATGAAACCTATTGATAAAAGCGAACT
GGAATTTGCTTTGCAGAAATTCAAAACCTTATCTAAAACCGACACTTACAATGACATCGCTGGAATTTTAAAGGGATTTA
TCAATAAACCAACTTTCCGGCTTCGGTTTCTGGTTACGTATCGTGACGGTTATAAAAGCGTAAATGTAACTGATATTGAT
TTTATTTACTCGGAGTTTAAAACTTCAAATTTAGTTCTCAAATCGGGTATAGTAATTCCGATTCCGCAGACAATGGAAGA
ACTGGAGCAGGAATTAGATCCTGATGTTTTCTTTCGTGCCAACAGGCAGTTTTTTATTCGTGCCGAAAGCATAAAATCGA
TTGCTAATTATTTTAATGCAAAACTAAAAATTCAGCTGAAAGCAGATCCTGAACGCGAAGTAATTATCAGCAGGGAAAAA
GCACCTTTTTTTAAACAGTGGATGGATCGCTAG

Upstream 100 bases:

>100_bases
AGAATATTGAGTTTAGATATAAAATTTTATTCAACAAAAAACCTGTTTTTTCACAATCGTTAGAAAGTTTTACAGTGCGT
TTACCATTAATATAGAGAGT

Downstream 100 bases:

>100_bases
TTAAGCTTCTGAGGTACTAAGATGCTAAGGTTCTAAGTTGAACCATACTTTTTTGCATTGCCTCCAGTTTTAACTGGAGA
AAAAATAAAGTCATCAACAA

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MRILIIEDESINASRLKRLLEELEPNCEILDIIDTVEGAVKWLKSNEKPDLITMDIRLADGISFSIFEEIKISSPVIFTT
AYDEYAVRAFKVNSIDYLMKPIDKSELEFALQKFKTLSKTDTYNDIAGILKGFINKPTFRLRFLVTYRDGYKSVNVTDID
FIYSEFKTSNLVLKSGIVIPIPQTMEELEQELDPDVFFRANRQFFIRAESIKSIANYFNAKLKIQLKADPEREVIISREK
APFFKQWMDR

Sequences:

>Translated_250_residues
MRILIIEDESINASRLKRLLEELEPNCEILDIIDTVEGAVKWLKSNEKPDLITMDIRLADGISFSIFEEIKISSPVIFTT
AYDEYAVRAFKVNSIDYLMKPIDKSELEFALQKFKTLSKTDTYNDIAGILKGFINKPTFRLRFLVTYRDGYKSVNVTDID
FIYSEFKTSNLVLKSGIVIPIPQTMEELEQELDPDVFFRANRQFFIRAESIKSIANYFNAKLKIQLKADPEREVIISREK
APFFKQWMDR
>Mature_250_residues
MRILIIEDESINASRLKRLLEELEPNCEILDIIDTVEGAVKWLKSNEKPDLITMDIRLADGISFSIFEEIKISSPVIFTT
AYDEYAVRAFKVNSIDYLMKPIDKSELEFALQKFKTLSKTDTYNDIAGILKGFINKPTFRLRFLVTYRDGYKSVNVTDID
FIYSEFKTSNLVLKSGIVIPIPQTMEELEQELDPDVFFRANRQFFIRAESIKSIANYFNAKLKIQLKADPEREVIISREK
APFFKQWMDR

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=264, Percent_Identity=28.4090909090909, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082052, Length=123, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29123; Mature: 29123

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIIEDESINASRLKRLLEELEPNCEILDIIDTVEGAVKWLKSNEKPDLITMDIRLAD
CEEEEEECCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
GISFSIFEEIKISSPVIFTTAYDEYAVRAFKVNSIDYLMKPIDKSELEFALQKFKTLSKT
CCCEEHHHHHCCCCCEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCC
DTYNDIAGILKGFINKPTFRLRFLVTYRDGYKSVNVTDIDFIYSEFKTSNLVLKSGIVIP
CCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCEEEE
IPQTMEELEQELDPDVFFRANRQFFIRAESIKSIANYFNAKLKIQLKADPEREVIISREK
CHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCC
APFFKQWMDR
CCHHHHHHCC
>Mature Secondary Structure
MRILIIEDESINASRLKRLLEELEPNCEILDIIDTVEGAVKWLKSNEKPDLITMDIRLAD
CEEEEEECCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
GISFSIFEEIKISSPVIFTTAYDEYAVRAFKVNSIDYLMKPIDKSELEFALQKFKTLSKT
CCCEEHHHHHCCCCCEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHCC
DTYNDIAGILKGFINKPTFRLRFLVTYRDGYKSVNVTDIDFIYSEFKTSNLVLKSGIVIP
CCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCEEEE
IPQTMEELEQELDPDVFFRANRQFFIRAESIKSIANYFNAKLKIQLKADPEREVIISREK
CHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCC
APFFKQWMDR
CCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA