Click here to switch to the map view.

The map label for this gene is mtrC [H]

Identifier: 146300973

GI number: 146300973

Start: 3847344

End: 3848480

Strand: Reverse

Name: mtrC [H]

Synonym: Fjoh_3228

Alternate gene names: 146300973

Gene position: 3848480-3847344 (Counterclockwise)

Preceding gene: 146300974

Following gene: 146300972

Centisome position: 63.12

GC content: 38.26

Gene sequence:

>1137_bases
ATGACAAAACAATTTTTCCAAAATTATAAAACACTCAGTAAGGCAGCCGTTTTATTGGTTATCATCGGTTTTTCATCTTG
TGGTAAAAGCGGGGCAGATGCCGGAGCTTTTGCTGCCCCAAAACCTGAAGTAGACTTTTTTCAGGCAGAAGCGATTACAG
GTGAAGTAGAAAAAAAATATCCGGGAACTGTTGAAGGTACAGTAAACGTTGACATAAAAGCACAAGTTTCTGGATATCTT
GAAGCGATTTATGTAAAAGAAGGAGATTATGTAAACAAAGGCCAGTCTCTATTTAAAATTAAAGGAGATGTTTATGCAGA
ACAGGTAAACAACAGCCGTGCAGCTTATAAAAGCGCTCAGGCAAATCTGGCAAATGCTAAACTTGAAGTAGAAAAAATCA
AACCGCTTGTTGACGGAAAAGTTTTTTCTGATATGCAGTTAAAAACGGCTCAGGCAAATTATGAAGCTGCCGTTGCTCAG
GTTGCACAGGCAAAAGCGGCTTTAGGATCTTCACAATTAAATGCAGATTTCTCTTTAATTAAAGCACCTGTAAGCGGTTA
TATCAGCCGAATTCCAAATCGTATTGGTAATCTGGTTACGCCGGCAGATGCTGTGCCGTTAACGGTTCTTTCAGACATTA
ATACCGTTTTTGTGTATTTCTCATTAACAGAAGCCGATTATCTTGCTTTTTCAAAAGATCCTAAATCAAATCAAACCGTA
AGCCTTATTATGGCTGATGACAGCGAATACGAGCAGAAAGGAAAACTGGAAGTAGCCAGCGGAAACATTGACCGTTCAAC
CGGAACAATTTCTTTAAAAGCCATTTTTCCAAATCCTAAAAAACTGCTTCGCGCTGGAGGTTCAGCAAGAGTGATTTTAA
ACAACAGTTTATCATCTGTCATCACCGTTCCAATGGCGAGCGTAAAAGATATTCAGGACAAATTTTTTGTTTTTGTTTTA
AAACCTGGAAATAAAGTTGCGATGGTTCCTATTGAAATTGGCGGAAGTTCCGGAACAGATTATTTCGTAAAATCGGGTTT
AAAACAAGGTGATAAAATCGCTTTAAACTCAATTGATGTTCTTTACGATAGTATGGAAGTAGTGCCAAAAACGGCAAAAG
CGGTAAGCAGCAAATAA

Upstream 100 bases:

>100_bases
GTATCGAAAAATTACGTTTGGGTAAATTTATCCCATTTTAAAGGTGTTTTGAGATGTTATTTTGCCGTCAAATTAGACGA
ATTCATTAAAGTGAAGTAAA

Downstream 100 bases:

>100_bases
TTTTTGATTTTAATATAAATAACATTTTCCATGTTAAAAAATATAATAGACAGGCCGGTTCTGGCCACCGTTATCTCCAT
TGTTTTGGTGATATTGGGTA

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MTKQFFQNYKTLSKAAVLLVIIGFSSCGKSGADAGAFAAPKPEVDFFQAEAITGEVEKKYPGTVEGTVNVDIKAQVSGYL
EAIYVKEGDYVNKGQSLFKIKGDVYAEQVNNSRAAYKSAQANLANAKLEVEKIKPLVDGKVFSDMQLKTAQANYEAAVAQ
VAQAKAALGSSQLNADFSLIKAPVSGYISRIPNRIGNLVTPADAVPLTVLSDINTVFVYFSLTEADYLAFSKDPKSNQTV
SLIMADDSEYEQKGKLEVASGNIDRSTGTISLKAIFPNPKKLLRAGGSARVILNNSLSSVITVPMASVKDIQDKFFVFVL
KPGNKVAMVPIEIGGSSGTDYFVKSGLKQGDKIALNSIDVLYDSMEVVPKTAKAVSSK

Sequences:

>Translated_378_residues
MTKQFFQNYKTLSKAAVLLVIIGFSSCGKSGADAGAFAAPKPEVDFFQAEAITGEVEKKYPGTVEGTVNVDIKAQVSGYL
EAIYVKEGDYVNKGQSLFKIKGDVYAEQVNNSRAAYKSAQANLANAKLEVEKIKPLVDGKVFSDMQLKTAQANYEAAVAQ
VAQAKAALGSSQLNADFSLIKAPVSGYISRIPNRIGNLVTPADAVPLTVLSDINTVFVYFSLTEADYLAFSKDPKSNQTV
SLIMADDSEYEQKGKLEVASGNIDRSTGTISLKAIFPNPKKLLRAGGSARVILNNSLSSVITVPMASVKDIQDKFFVFVL
KPGNKVAMVPIEIGGSSGTDYFVKSGLKQGDKIALNSIDVLYDSMEVVPKTAKAVSSK
>Mature_377_residues
TKQFFQNYKTLSKAAVLLVIIGFSSCGKSGADAGAFAAPKPEVDFFQAEAITGEVEKKYPGTVEGTVNVDIKAQVSGYLE
AIYVKEGDYVNKGQSLFKIKGDVYAEQVNNSRAAYKSAQANLANAKLEVEKIKPLVDGKVFSDMQLKTAQANYEAAVAQV
AQAKAALGSSQLNADFSLIKAPVSGYISRIPNRIGNLVTPADAVPLTVLSDINTVFVYFSLTEADYLAFSKDPKSNQTVS
LIMADDSEYEQKGKLEVASGNIDRSTGTISLKAIFPNPKKLLRAGGSARVILNNSLSSVITVPMASVKDIQDKFFVFVLK
PGNKVAMVPIEIGGSSGTDYFVKSGLKQGDKIALNSIDVLYDSMEVVPKTAKAVSSK

Specific function: Cell membrane lipoprotein, involved in cell membrane permeability to hydrophobic compounds such as antibiotics, dyes and detergents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1789929, Length=364, Percent_Identity=25.2747252747253, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789665, Length=370, Percent_Identity=25.9459459459459, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786668, Length=372, Percent_Identity=27.1505376344086, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082036, Length=314, Percent_Identity=24.8407643312102, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87081796, Length=318, Percent_Identity=26.7295597484277, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87081951, Length=173, Percent_Identity=30.0578034682081, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 40405; Mature: 40273

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQFFQNYKTLSKAAVLLVIIGFSSCGKSGADAGAFAAPKPEVDFFQAEAITGEVEKKY
CCHHHHHHHHHHHHHEEEEEEEECHHCCCCCCCCCCCCCCCCCCCEEEEHHHCCCHHHCC
PGTVEGTVNVDIKAQVSGYLEAIYVKEGDYVNKGQSLFKIKGDVYAEQVNNSRAAYKSAQ
CCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHH
ANLANAKLEVEKIKPLVDGKVFSDMQLKTAQANYEAAVAQVAQAKAALGSSQLNADFSLI
CCCCCCEEEHHHHCHHHCCCEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
KAPVSGYISRIPNRIGNLVTPADAVPLTVLSDINTVFVYFSLTEADYLAFSKDPKSNQTV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEECCCCCCCCEE
SLIMADDSEYEQKGKLEVASGNIDRSTGTISLKAIFPNPKKLLRAGGSARVILNNSLSSV
EEEEECCCCHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCCCCE
ITVPMASVKDIQDKFFVFVLKPGNKVAMVPIEIGGSSGTDYFVKSGLKQGDKIALNSIDV
EEECCHHHHHCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHCCCCCCEEEECHHHH
LYDSMEVVPKTAKAVSSK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKQFFQNYKTLSKAAVLLVIIGFSSCGKSGADAGAFAAPKPEVDFFQAEAITGEVEKKY
CHHHHHHHHHHHHHEEEEEEEECHHCCCCCCCCCCCCCCCCCCCEEEEHHHCCCHHHCC
PGTVEGTVNVDIKAQVSGYLEAIYVKEGDYVNKGQSLFKIKGDVYAEQVNNSRAAYKSAQ
CCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHH
ANLANAKLEVEKIKPLVDGKVFSDMQLKTAQANYEAAVAQVAQAKAALGSSQLNADFSLI
CCCCCCEEEHHHHCHHHCCCEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
KAPVSGYISRIPNRIGNLVTPADAVPLTVLSDINTVFVYFSLTEADYLAFSKDPKSNQTV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEECCCCCCCCEE
SLIMADDSEYEQKGKLEVASGNIDRSTGTISLKAIFPNPKKLLRAGGSARVILNNSLSSV
EEEEECCCCHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCCCCE
ITVPMASVKDIQDKFFVFVLKPGNKVAMVPIEIGGSSGTDYFVKSGLKQGDKIALNSIDV
EEECCHHHHHCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHCCCCCCEEEECHHHH
LYDSMEVVPKTAKAVSSK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8196548 [H]