| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300948
Identifier: 146300948
GI number: 146300948
Start: 3818600
End: 3821545
Strand: Reverse
Name: 146300948
Synonym: Fjoh_3203
Alternate gene names: NA
Gene position: 3821545-3818600 (Counterclockwise)
Preceding gene: 146300951
Following gene: 146300947
Centisome position: 62.68
GC content: 37.47
Gene sequence:
>2946_bases ATGAGAAAACAATTACATGGTATTTTATTTAAAAGAGAAAAAAGCCGCCACTTTATAATGTGGATTTTTTTCATTCTCTT AACTTCAAATTTGTATGCGCAGCGAGGTTATTATGATGCAGCTTATAAAAGATACGAAGCAAACTTAGGACAATTGTCTA ATGGAGCTTCAGTAACTGCAAAATCGTATAATCAAGCTGATTTACAGTCAGAAGCTTCAGATCAAATTTGTGTGAATATG TCTGCATCAAACGCAGCAGTTCAATGGACGTTAACTGAGGCTGCAGACGGACTCGTTATTCGATATAGCGTTCCTGACGG TCAGTCTGGAACAATAGGCGTATATAATGGCAGTACAAAAATTACAACGCTTACTTTGACTTCGACTTGGTCATGGGAAT ATTTGTGGAGTAATGGAAATCCAAATAACAACGGAATTACAAACCAAAATCCAAGAATGCGTTTTGACGAAGTACGTTAT AAACTTCCAAGTAAAATACCAGTATCCGGAACATTGCGTTTGGTAAGAGAAACGGGTAATATTCACTTGGATTTTGCTGA AATGGAACCCATTCCGGCTGCAGTAACAGCGCCTTCAGGTTCTGTAACTTATACAGGAAACGGAAGTGATCTTCAAACTT TTATTGATGCCAACGGCGGTAAAAAAATATTTGTTCCAAGCGGGGTTTTTAATGTGAACCGCGAATTGTATTTTGGTTCT GCCAATACCTCTTTAATTGGAGCGGGAATGTGGTACACGCAGATTAATTTTACCAATACCAGCAGCGGTAACGGAGGATT GAGAGCTAATGCAAGTAATATTTCTTTTTCAGATTTGTATTTAACCACAAATTCTGCTTCAAGAAGTAATTCTTATAAAG CGATAAATGGTGTATTTACATCTGGTTCTACAATAAAAAATATCTGGGCAGAACATTTTGAATGCGGTGCATGGATTGCT CAATATAATGTTGGCGGACCCGCAATTGCAGATGGATTTACCTTATCGCACTGCCGTTTTAGAAATAATTATGCTGATGG AATTAACCTTTGCAAAGGAACGGCAAATGCTATTGTTGAACATTGTAATTTTAGAAATAACGGTGACGACGATCAGGCAA TCTGGTCTGCTAACGGACAGGAATGTATCAACAATACTTTTAGATATAATACGTCAGAAAACTGCTGGCGTGCCTGCGGA CTGGCTATTTATGGCGGAAAAAATAATAAAGCTTACAACCTGATTATTAAAGACAATCTTGAAGCAGGTATTCGTGTGAG CAATAATTTTGACGGCGCACCATTTAACAATGACGGAAACCATGAAATACACGATATTACAGTAAGCACATGCGGAACTT TTAATGATACTTATAACAATCCTGTTGCGGCGGTAGATATTTTCAGCGCCAGTAATGCCGGAACTCAGGTTAAGAACGTT CAGTTGTATAATATCGATATTTTAGATTCAAGAAACGATGCTATTTCTATAAGCAAAAGATCTGGAGACGGTATTTACAA TCTTAGTTTTAAAAACATTACAGTTAACGGAACAGGGAAAGAATATCCAAACAACAATGCTCTTAACAGAAATTGGGGCA GAGGTTATTTTGTACTTATTGCGGGTTCTCCAAACGGAAACGGAACGTACTGCAATATGAATTATTCTAACAGAGGAGGA AATGCAGCAGCTAATGAAGAAATTAGTGCGATTGGCAATTTTTCTTGGACACAAAGCAGTAACTGTTCTGTAACAAATGT TCCGGTAACAGGCGTAACAATTGCACCAACAACAGTAACGCTGGGTGCCGGAGCAACACAACAATTAACGCCGACTATTG CTCCTGCAAATGCAACAAACAAAAATGTATCGTATAGTTCTAATAATACTGGCGTGGCAACAGTAAATGCATCTGGTTTA GTTACTGCGATTGCATCCGGATCTGCCACAATAACGGTTACTACACAAGATGGAGCTAAAACAGCATCATCGGTAATTAC TGTAAATTCATCAGCTGCAGCTGTAACAAGCGTTAGTTTAAGTCCTAATGCAGCATCATTATCAGTAGGAGGAACACAAC AATTAACACCAACTGTTCTGCCTTCTAATGCAACAAATAAATCGGTAAGTTATAGTTCAAACAATACAGGTGTTGCCACA GTAAATGCTTCAGGACTTGTAACGGCTGTTGCTAACGGAACAGCAACAATTACAGTAACAACAGCAGATGGAAACAAAAC CAGTACAGCCTTAATTACGGTAAGTACAGCTACAGGAAGTTATTTTACCATTAAAAACAAATGGACGAATAATTATTTAT ATGATGCAGGGGCTAATGTAGGTTATGGTGCAACTGTTGCAAATAACAATTACAAATGGGAAAAAATAGCTGTAGATGCC ACAAACTTTATCTTGAAAAATGTAGGTACAGGAGATGTAATGCATATTGAAAATTTAACAGGATCTGTACAATGTACAGC AGCAGGATCTGACTGGTGGAGCGCACAATGGTCAACCGAAAATGTAGACGGAACCTGGGTAAGAATCAAAAACAGATGGC AGACAGGAAGTATGATTCATATTGAAAACCTAACAGGTTCTGCTCAATATATAGGAGCTCAAAATAGCTGGGAAAGCGCA CAATGGCAGTTTCAGGCAGCTTCGGCATCAAAGAAAATAAATGAAGCCGTAGTAACAGCCGAAAATAATACTGCAGTTAG TATTTATCCGAATCCGTCAGTTAATAATGAATTTAACATTGCATTACCAGAGTTAAGCCCAGACGATACAGCAATAATAA CGGTTACAGATATAAACGGAAGAAAAGTTTTAGTAAAGAAACTGAATTCGTCAGCAAAAATTAATCATGATTTGGCTTCT GGAATTTATGTTGTTACAATTCATTCAAATGCTTTAAATATTTCTAAAAAACTGATTGTGAAATAA
Upstream 100 bases:
>100_bases TATCTTGATTTTTATTCCACTTTTTTTGTAATCTTTTTTTTAGGTCTAGTTTCGTTATAATCCTATTTCTAGGAACTAAC TATTTAAAAAACCGAAAATT
Downstream 100 bases:
>100_bases TTTGCATTAATATTTTTTTAATTTAAATAAATCCAATAACCCTTATGCAGCATGCATAAGGGTTTTGTTTTTTTAAACGA AATAAACAGCCAGCATAAAA
Product: Ig domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 981; Mature: 981
Protein sequence:
>981_residues MRKQLHGILFKREKSRHFIMWIFFILLTSNLYAQRGYYDAAYKRYEANLGQLSNGASVTAKSYNQADLQSEASDQICVNM SASNAAVQWTLTEAADGLVIRYSVPDGQSGTIGVYNGSTKITTLTLTSTWSWEYLWSNGNPNNNGITNQNPRMRFDEVRY KLPSKIPVSGTLRLVRETGNIHLDFAEMEPIPAAVTAPSGSVTYTGNGSDLQTFIDANGGKKIFVPSGVFNVNRELYFGS ANTSLIGAGMWYTQINFTNTSSGNGGLRANASNISFSDLYLTTNSASRSNSYKAINGVFTSGSTIKNIWAEHFECGAWIA QYNVGGPAIADGFTLSHCRFRNNYADGINLCKGTANAIVEHCNFRNNGDDDQAIWSANGQECINNTFRYNTSENCWRACG LAIYGGKNNKAYNLIIKDNLEAGIRVSNNFDGAPFNNDGNHEIHDITVSTCGTFNDTYNNPVAAVDIFSASNAGTQVKNV QLYNIDILDSRNDAISISKRSGDGIYNLSFKNITVNGTGKEYPNNNALNRNWGRGYFVLIAGSPNGNGTYCNMNYSNRGG NAAANEEISAIGNFSWTQSSNCSVTNVPVTGVTIAPTTVTLGAGATQQLTPTIAPANATNKNVSYSSNNTGVATVNASGL VTAIASGSATITVTTQDGAKTASSVITVNSSAAAVTSVSLSPNAASLSVGGTQQLTPTVLPSNATNKSVSYSSNNTGVAT VNASGLVTAVANGTATITVTTADGNKTSTALITVSTATGSYFTIKNKWTNNYLYDAGANVGYGATVANNNYKWEKIAVDA TNFILKNVGTGDVMHIENLTGSVQCTAAGSDWWSAQWSTENVDGTWVRIKNRWQTGSMIHIENLTGSAQYIGAQNSWESA QWQFQAASASKKINEAVVTAENNTAVSIYPNPSVNNEFNIALPELSPDDTAIITVTDINGRKVLVKKLNSSAKINHDLAS GIYVVTIHSNALNISKKLIVK
Sequences:
>Translated_981_residues MRKQLHGILFKREKSRHFIMWIFFILLTSNLYAQRGYYDAAYKRYEANLGQLSNGASVTAKSYNQADLQSEASDQICVNM SASNAAVQWTLTEAADGLVIRYSVPDGQSGTIGVYNGSTKITTLTLTSTWSWEYLWSNGNPNNNGITNQNPRMRFDEVRY KLPSKIPVSGTLRLVRETGNIHLDFAEMEPIPAAVTAPSGSVTYTGNGSDLQTFIDANGGKKIFVPSGVFNVNRELYFGS ANTSLIGAGMWYTQINFTNTSSGNGGLRANASNISFSDLYLTTNSASRSNSYKAINGVFTSGSTIKNIWAEHFECGAWIA QYNVGGPAIADGFTLSHCRFRNNYADGINLCKGTANAIVEHCNFRNNGDDDQAIWSANGQECINNTFRYNTSENCWRACG LAIYGGKNNKAYNLIIKDNLEAGIRVSNNFDGAPFNNDGNHEIHDITVSTCGTFNDTYNNPVAAVDIFSASNAGTQVKNV QLYNIDILDSRNDAISISKRSGDGIYNLSFKNITVNGTGKEYPNNNALNRNWGRGYFVLIAGSPNGNGTYCNMNYSNRGG NAAANEEISAIGNFSWTQSSNCSVTNVPVTGVTIAPTTVTLGAGATQQLTPTIAPANATNKNVSYSSNNTGVATVNASGL VTAIASGSATITVTTQDGAKTASSVITVNSSAAAVTSVSLSPNAASLSVGGTQQLTPTVLPSNATNKSVSYSSNNTGVAT VNASGLVTAVANGTATITVTTADGNKTSTALITVSTATGSYFTIKNKWTNNYLYDAGANVGYGATVANNNYKWEKIAVDA TNFILKNVGTGDVMHIENLTGSVQCTAAGSDWWSAQWSTENVDGTWVRIKNRWQTGSMIHIENLTGSAQYIGAQNSWESA QWQFQAASASKKINEAVVTAENNTAVSIYPNPSVNNEFNIALPELSPDDTAIITVTDINGRKVLVKKLNSSAKINHDLAS GIYVVTIHSNALNISKKLIVK >Mature_981_residues MRKQLHGILFKREKSRHFIMWIFFILLTSNLYAQRGYYDAAYKRYEANLGQLSNGASVTAKSYNQADLQSEASDQICVNM SASNAAVQWTLTEAADGLVIRYSVPDGQSGTIGVYNGSTKITTLTLTSTWSWEYLWSNGNPNNNGITNQNPRMRFDEVRY KLPSKIPVSGTLRLVRETGNIHLDFAEMEPIPAAVTAPSGSVTYTGNGSDLQTFIDANGGKKIFVPSGVFNVNRELYFGS ANTSLIGAGMWYTQINFTNTSSGNGGLRANASNISFSDLYLTTNSASRSNSYKAINGVFTSGSTIKNIWAEHFECGAWIA QYNVGGPAIADGFTLSHCRFRNNYADGINLCKGTANAIVEHCNFRNNGDDDQAIWSANGQECINNTFRYNTSENCWRACG LAIYGGKNNKAYNLIIKDNLEAGIRVSNNFDGAPFNNDGNHEIHDITVSTCGTFNDTYNNPVAAVDIFSASNAGTQVKNV QLYNIDILDSRNDAISISKRSGDGIYNLSFKNITVNGTGKEYPNNNALNRNWGRGYFVLIAGSPNGNGTYCNMNYSNRGG NAAANEEISAIGNFSWTQSSNCSVTNVPVTGVTIAPTTVTLGAGATQQLTPTIAPANATNKNVSYSSNNTGVATVNASGL VTAIASGSATITVTTQDGAKTASSVITVNSSAAAVTSVSLSPNAASLSVGGTQQLTPTVLPSNATNKSVSYSSNNTGVAT VNASGLVTAVANGTATITVTTADGNKTSTALITVSTATGSYFTIKNKWTNNYLYDAGANVGYGATVANNNYKWEKIAVDA TNFILKNVGTGDVMHIENLTGSVQCTAAGSDWWSAQWSTENVDGTWVRIKNRWQTGSMIHIENLTGSAQYIGAQNSWESA QWQFQAASASKKINEAVVTAENNTAVSIYPNPSVNNEFNIALPELSPDDTAIITVTDINGRKVLVKKLNSSAKINHDLAS GIYVVTIHSNALNISKKLIVK
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003343 - InterPro: IPR008964 - InterPro: IPR022409 [H]
Pfam domain/function: PF02368 Big_2 [H]
EC number: NA
Molecular weight: Translated: 104877; Mature: 104877
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKQLHGILFKREKSRHFIMWIFFILLTSNLYAQRGYYDAAYKRYEANLGQLSNGASVTA CCCCCCEEEEEECCCCEEHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCCCCEEEE KSYNQADLQSEASDQICVNMSASNAAVQWTLTEAADGLVIRYSVPDGQSGTIGVYNGSTK CCCCCHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCE ITTLTLTSTWSWEYLWSNGNPNNNGITNQNPRMRFDEVRYKLPSKIPVSGTLRLVRETGN EEEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCC IHLDFAEMEPIPAAVTAPSGSVTYTGNGSDLQTFIDANGGKKIFVPSGVFNVNRELYFGS EEEEEHHCCCCCEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEECCEEECCEEEEECC ANTSLIGAGMWYTQINFTNTSSGNGGLRANASNISFSDLYLTTNSASRSNSYKAINGVFT CCCEEEECCEEEEEEEEECCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEE SGSTIKNIWAEHFECGAWIAQYNVGGPAIADGFTLSHCRFRNNYADGINLCKGTANAIVE CCCHHHHHHHHHHCCCEEEEEECCCCCEEECCEEEEEEEECCCCCCCHHHHCCHHHHHHH HCNFRNNGDDDQAIWSANGQECINNTFRYNTSENCWRACGLAIYGGKNNKAYNLIIKDNL HCCCCCCCCCCCEEECCCCHHHHCCCEECCCCCCHHHHCCEEEECCCCCCEEEEEEECCC EAGIRVSNNFDGAPFNNDGNHEIHDITVSTCGTFNDTYNNPVAAVDIFSASNAGTQVKNV CCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEE QLYNIDILDSRNDAISISKRSGDGIYNLSFKNITVNGTGKEYPNNNALNRNWGRGYFVLI EEEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE AGSPNGNGTYCNMNYSNRGGNAAANEEISAIGNFSWTQSSNCSVTNVPVTGVTIAPTTVT EECCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCEEEEEECCEEEE LGAGATQQLTPTIAPANATNKNVSYSSNNTGVATVNASGLVTAIASGSATITVTTQDGAK ECCCCCCCCCCEECCCCCCCCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEEECCCCC TASSVITVNSSAAAVTSVSLSPNAASLSVGGTQQLTPTVLPSNATNKSVSYSSNNTGVAT CCCEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCEECCCCCCCCEEEECCCCCEEEE VNASGLVTAVANGTATITVTTADGNKTSTALITVSTATGSYFTIKNKWTNNYLYDAGANV EECCCEEEEEECCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCEEEECCCCC GYGATVANNNYKWEKIAVDATNFILKNVGTGDVMHIENLTGSVQCTAAGSDWWSAQWSTE CCCEEEECCCEEEEEEEEEHHHHHEECCCCCCEEEEECCCCEEEEEECCCCCEECCCCCC NVDGTWVRIKNRWQTGSMIHIENLTGSAQYIGAQNSWESAQWQFQAASASKKINEAVVTA CCCEEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEE ENNTAVSIYPNPSVNNEFNIALPELSPDDTAIITVTDINGRKVLVKKLNSSAKINHDLAS CCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEEECCCCCEECCHHHC GIYVVTIHSNALNISKKLIVK CEEEEEEECCCCCCCEEEEEC >Mature Secondary Structure MRKQLHGILFKREKSRHFIMWIFFILLTSNLYAQRGYYDAAYKRYEANLGQLSNGASVTA CCCCCCEEEEEECCCCEEHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCCCCEEEE KSYNQADLQSEASDQICVNMSASNAAVQWTLTEAADGLVIRYSVPDGQSGTIGVYNGSTK CCCCCHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCE ITTLTLTSTWSWEYLWSNGNPNNNGITNQNPRMRFDEVRYKLPSKIPVSGTLRLVRETGN EEEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEECCC IHLDFAEMEPIPAAVTAPSGSVTYTGNGSDLQTFIDANGGKKIFVPSGVFNVNRELYFGS EEEEEHHCCCCCEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEECCEEECCEEEEECC ANTSLIGAGMWYTQINFTNTSSGNGGLRANASNISFSDLYLTTNSASRSNSYKAINGVFT CCCEEEECCEEEEEEEEECCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEE SGSTIKNIWAEHFECGAWIAQYNVGGPAIADGFTLSHCRFRNNYADGINLCKGTANAIVE CCCHHHHHHHHHHCCCEEEEEECCCCCEEECCEEEEEEEECCCCCCCHHHHCCHHHHHHH HCNFRNNGDDDQAIWSANGQECINNTFRYNTSENCWRACGLAIYGGKNNKAYNLIIKDNL HCCCCCCCCCCCEEECCCCHHHHCCCEECCCCCCHHHHCCEEEECCCCCCEEEEEEECCC EAGIRVSNNFDGAPFNNDGNHEIHDITVSTCGTFNDTYNNPVAAVDIFSASNAGTQVKNV CCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEE QLYNIDILDSRNDAISISKRSGDGIYNLSFKNITVNGTGKEYPNNNALNRNWGRGYFVLI EEEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE AGSPNGNGTYCNMNYSNRGGNAAANEEISAIGNFSWTQSSNCSVTNVPVTGVTIAPTTVT EECCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCEEEEEECCEEEE LGAGATQQLTPTIAPANATNKNVSYSSNNTGVATVNASGLVTAIASGSATITVTTQDGAK ECCCCCCCCCCEECCCCCCCCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEEECCCCC TASSVITVNSSAAAVTSVSLSPNAASLSVGGTQQLTPTVLPSNATNKSVSYSSNNTGVAT CCCEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCCEECCCCCCCCEEEECCCCCEEEE VNASGLVTAVANGTATITVTTADGNKTSTALITVSTATGSYFTIKNKWTNNYLYDAGANV EECCCEEEEEECCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCEEEECCCCC GYGATVANNNYKWEKIAVDATNFILKNVGTGDVMHIENLTGSVQCTAAGSDWWSAQWSTE CCCEEEECCCEEEEEEEEEHHHHHEECCCCCCEEEEECCCCEEEEEECCCCCEECCCCCC NVDGTWVRIKNRWQTGSMIHIENLTGSAQYIGAQNSWESAQWQFQAASASKKINEAVVTA CCCEEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEE ENNTAVSIYPNPSVNNEFNIALPELSPDDTAIITVTDINGRKVLVKKLNSSAKINHDLAS CCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEEECCCCCEECCHHHC GIYVVTIHSNALNISKKLIVK CEEEEEEECCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286; 8226639 [H]