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The map label for this gene is 146300934

Identifier: 146300934

GI number: 146300934

Start: 3799639

End: 3801069

Strand: Reverse

Name: 146300934

Synonym: Fjoh_3189

Alternate gene names: NA

Gene position: 3801069-3799639 (Counterclockwise)

Preceding gene: 146300935

Following gene: 146300930

Centisome position: 62.34

GC content: 36.27

Gene sequence:

>1431_bases
ATGAATAAAAAGATAATATTAATCTTGTCGATTTTTATTTGCAGCACAGTTGTTTTTGCTGCTGCACAAGACACTATTCG
TGTGGGAGCATTTGGAAAAGTAACTCTTTATAAACCTAAAACAGATCCAAATGCTGTTGTTTTGTTTATTTCCGGTGATG
GAGGATGGAACAGCGGCGTTGTCGAAATGGCTAAAAACATAGTAGATCAGGGCGGTTTGGTTGCAGGTATTGATATTCAG
CATTATTTTAAAGCTATTAAAAAAGAAAAAAACAAATGCTATTATCCGGCAGGAGATTTTGAAGAATTGAGTCTTATTTT
GCAAAAGAAATTAAAGCTGAAACAATATTTTAAACCAGTTTTAATTGGATATTCTTCCGGAGCAACTCTTGTATACGGCA
TGCTGGCACAGGCTCCAGCCAATACGTTCAGCGGTGCGGTGGCTTTAGGATTTTGTCCTGACATAGAAACTGACCGAACT
TTATGTGATGGTTCCGGATTGACTTCTCATGTTTTAAAAGAAGGAAAAGCGTATTATCTTGATAAAACAGAAAAACTAAC
TGCACCTTTTATCGTTTTGCAGGGCGCAACAGATCAGGTTTGTAATTATGCAGATACTAAAAAATATATGGACGGGCTGA
AAGAAGGAAAATTAATTACACTTTCAAAAGTAGGGCATGGTTTTTCTGTTACCAAAAACTGGCTGCCACAGTTTATTGAG
GCTTACAAAGAAATTCTAAATACACCTAATTACGCCAGACAAAAAGCAGAACAAAATCCTTTATTGAAAGAGCAGAACCT
GGCGCCGCTTCCGTTTGAAATGCCTTTAACTTTAATTCCTGCAAAAAATAAAGATGAAAATCTGCCTATTGCTTTTTTAA
TTTCTGGCGACGGCGGATGGACAAGTTTTGACCAGTCAGTTGGTGAAGCCTTGGCAGAGAAAGGGATTTCTGTAATAGGA
CTCGATGCTCAGAAATATTTTTGGAATGCCAAAACGCCTTTAGAAACTTCTGCGGCAATTTCTAAAGCTGTAGAACATTA
TTTACAACAATGGAATAAAAAGACGTTTATACTTGCCGGTTATTCGTTTGGAGCTTCTGTTGTTCCATTTGCGGCTGCTA
ATTTCCCTGAACCTTTAAAAGAAAAATTAAAAGGTGTGTATTCCTTATCGCCAGATGTAAAAGCCGATTTTGAAATTCAT
ATTGCCGATATGCTGAGTCTGGGAAGTTCAAAAGATAACTACGATGTGATTTCTGAAATTAAGAAAATTAAAGCCTATAA
TCCTGTTTGCTTTTTTGGAACCGAAGAAGATCCTGAAACCCGTAAGCGTTTTGCAGAATCGGATATAAAAACAATACAAA
TACCAGGCTCACATCACTATAATAATGATTATGCTAAAGTTACTGAAAGCATTATAAAAGAAATGAAGTAA

Upstream 100 bases:

>100_bases
TTATGATTTACTGCAGGCTCCTTTGGTTTTAAACAAAGTAGTCAAACCATAATTTTTAAAATAACAGCATTTAATTGTTC
AATACTTAAAACCAAGTAAG

Downstream 100 bases:

>100_bases
AAACAATGCTGTTTTTTACTGAAAAGCCTCGTGCATAAATTCTTTTAAACCTTGTTCTTCTAGTATTTCAATTGAAAATT
CTCCAAAACGTTTTGGAAGC

Product: virulence factor family protein

Products: NA

Alternate protein names: Virulence Protein; Acid lerance Protein; Type IV Secretion System VirJ-Like Protein; Type IV Secretory Pathway VirJ Component-Like Protein; Acid Virulence Protein B; AcvB-Related Protein; Type IV Secretory Pathway VirJ Component; Virulance And Acid lerance Protein; Type IV Secretory Pathway Virj Component-Related Protein; Type IV Secretion System Virj-Like Protein; Virj-Like Protein; Virulence Factor; Chromosomal Virulence Protein B; Glycosyl Transferase/Polysaccharide Deacetylase

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFISGDGGWNSGVVEMAKNIVDQGGLVAGIDIQ
HYFKAIKKEKNKCYYPAGDFEELSLILQKKLKLKQYFKPVLIGYSSGATLVYGMLAQAPANTFSGAVALGFCPDIETDRT
LCDGSGLTSHVLKEGKAYYLDKTEKLTAPFIVLQGATDQVCNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIE
AYKEILNTPNYARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGWTSFDQSVGEALAEKGISVIG
LDAQKYFWNAKTPLETSAAISKAVEHYLQQWNKKTFILAGYSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIH
IADMLSLGSSKDNYDVISEIKKIKAYNPVCFFGTEEDPETRKRFAESDIKTIQIPGSHHYNNDYAKVTESIIKEMK

Sequences:

>Translated_476_residues
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFISGDGGWNSGVVEMAKNIVDQGGLVAGIDIQ
HYFKAIKKEKNKCYYPAGDFEELSLILQKKLKLKQYFKPVLIGYSSGATLVYGMLAQAPANTFSGAVALGFCPDIETDRT
LCDGSGLTSHVLKEGKAYYLDKTEKLTAPFIVLQGATDQVCNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIE
AYKEILNTPNYARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGWTSFDQSVGEALAEKGISVIG
LDAQKYFWNAKTPLETSAAISKAVEHYLQQWNKKTFILAGYSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIH
IADMLSLGSSKDNYDVISEIKKIKAYNPVCFFGTEEDPETRKRFAESDIKTIQIPGSHHYNNDYAKVTESIIKEMK
>Mature_476_residues
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFISGDGGWNSGVVEMAKNIVDQGGLVAGIDIQ
HYFKAIKKEKNKCYYPAGDFEELSLILQKKLKLKQYFKPVLIGYSSGATLVYGMLAQAPANTFSGAVALGFCPDIETDRT
LCDGSGLTSHVLKEGKAYYLDKTEKLTAPFIVLQGATDQVCNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIE
AYKEILNTPNYARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGWTSFDQSVGEALAEKGISVIG
LDAQKYFWNAKTPLETSAAISKAVEHYLQQWNKKTFILAGYSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIH
IADMLSLGSSKDNYDVISEIKKIKAYNPVCFFGTEEDPETRKRFAESDIKTIQIPGSHHYNNDYAKVTESIIKEMK

Specific function: Unknown

COG id: COG3946

COG function: function code U; Type IV secretory pathway, VirJ component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52533; Mature: 52533

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFISGDGGWNSGV
CCCCEEHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCEEEEEEECCCCCCHHH
VEMAKNIVDQGGLVAGIDIQHYFKAIKKEKNKCYYPAGDFEELSLILQKKLKLKQYFKPV
HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCE
LIGYSSGATLVYGMLAQAPANTFSGAVALGFCPDIETDRTLCDGSGLTSHVLKEGKAYYL
EEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCCHHHHHHCCCEEEE
DKTEKLTAPFIVLQGATDQVCNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIE
CCCCCCCCCEEEEECCHHHHHCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
AYKEILNTPNYARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGW
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
TSFDQSVGEALAEKGISVIGLDAQKYFWNAKTPLETSAAISKAVEHYLQQWNKKTFILAG
CHHHHHHHHHHHHCCCEEEEECHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
YSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIHIADMLSLGSSKDNYDVISEI
CCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHHH
KKIKAYNPVCFFGTEEDPETRKRFAESDIKTIQIPGSHHYNNDYAKVTESIIKEMK
HHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKKIILILSIFICSTVVFAAAQDTIRVGAFGKVTLYKPKTDPNAVVLFISGDGGWNSGV
CCCCEEHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCEEEEEEECCCCCCHHH
VEMAKNIVDQGGLVAGIDIQHYFKAIKKEKNKCYYPAGDFEELSLILQKKLKLKQYFKPV
HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCE
LIGYSSGATLVYGMLAQAPANTFSGAVALGFCPDIETDRTLCDGSGLTSHVLKEGKAYYL
EEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCCHHHHHHCCCEEEE
DKTEKLTAPFIVLQGATDQVCNYADTKKYMDGLKEGKLITLSKVGHGFSVTKNWLPQFIE
CCCCCCCCCEEEEECCHHHHHCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
AYKEILNTPNYARQKAEQNPLLKEQNLAPLPFEMPLTLIPAKNKDENLPIAFLISGDGGW
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
TSFDQSVGEALAEKGISVIGLDAQKYFWNAKTPLETSAAISKAVEHYLQQWNKKTFILAG
CHHHHHHHHHHHHCCCEEEEECHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
YSFGASVVPFAAANFPEPLKEKLKGVYSLSPDVKADFEIHIADMLSLGSSKDNYDVISEI
CCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHHH
KKIKAYNPVCFFGTEEDPETRKRFAESDIKTIQIPGSHHYNNDYAKVTESIIKEMK
HHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA