| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is btuB [H]
Identifier: 146300924
GI number: 146300924
Start: 3785434
End: 3787800
Strand: Direct
Name: btuB [H]
Synonym: Fjoh_3179
Alternate gene names: 146300924
Gene position: 3785434-3787800 (Clockwise)
Preceding gene: 146300923
Following gene: 146300925
Centisome position: 62.09
GC content: 35.87
Gene sequence:
>2367_bases ATGAATCTCAAAATAGTATTGCTCTTTTTATTTTCGTCGACATTTTTAATCGCACAAAACAGAATCTCTGGAAAAGTAAA TGATGAACACGGAAACCCGTTAAGCGGTGTTAACATTCAGCTTTTAGGAACACAAATAAATGCTGCAACAAATGCAGACG GGTTTTATCAGATTGAAAATCTGGCAAAAGGCAGTTATACTATTGAAATAAGTTTAGATGGATATGTTTCGAAGAAGCAG ACTATTGTTTTAGAAAATTCTGTAAATACTACAGTTGCTCTAACTTTAGAAAAAGCACATACATCAAAAGAAGCAGAGAA ATTAAATGACGTAGTGGTAAAAGGTGTCTCTGAAAAAAGAAAAAAAGAGGAAACAGCAGAAGCCGTTTCTGTAATAGAAA TGAAGGAAGCTAAATTTAAAACGGCAGATTTAGGCGAAGTGCTTGCCCAGACACAGGGTATTAATGTTAGGCGTACCGGA GGTTTAGGCTCAAGAACCAATTTTTCGATGAATGGACTCACAGGAAATCAAATCCGATTTTTCCTGGAGGGAATTCCTTT GGAATATCACGGTTATACTTTCGGGATTTCAACAGTTCCGGTTAATTTAGTAGATCGTGTTGAGGTTTACAAAGGTGTCG TTCCTATCGAATTTGGAGCAGACGCGCTTGGCGGTGCTGTTAATTTAATTACGCCAAAGATAAAATCTGGTTTCAGCGGT TCATTTTCAGCTCAGGCAGGATCTTTTGGAACTTACAGAACTTCATTGATACTTAGTGACTACAATAAAAAGACTGGATT TTTTATAAAAGGAAACGGATTTTACGATGCTTCCAAAAACAATTATAAAGTAGATGTTGATGTTCCGGATGATGCCGGCA AGATCAAAAAAGTAACGGTTCCTAGATTTCATGATGCCTACAAAGGCTACGGATTGCAGCTGGTAACTGGTGTAAAAGAC AGAATCTGGGCAAAAGAATTAAGTATAGAAGGATTTTACACGGATTACACAAAAGAAATTCAGCACAATCAATTAATGGT TGGCGTTCCTTACGGAGAAGTTATGACGTATCGAAAATCGGCTGGAACTGTTCTTACCTATCGCAATGACTTTAGTGAAA ATTTTAATTTAGACTTTATTTCGGGATACAATTACAGAGAACGCCAGTTTAAAGATGTATCTGATTATGTTTACAATTGG TACGGTGAACGTATCGAAGGTTCTGCAGGAAATATCAAAGGAGAAATTTCAGAATCTACAGGTCCAAGTGATACTTACAC CTGGAATAATGATGTTTTTTCACGCCTGAAAGCTTCATGGAAAATCAATGAGCAGTATGCTGTGAGTTTTACATCAGCAC CTACCTACTCCAAACAAACCGGAGATGACAGACTTATTGACGGCTATGATCCAGCCGCTGCGGTAAGAGATTTGTTTACA TGGGTTAATGGTGCAGACTTTAAAATAAATGCCTTTAATGAAAAATTAGAGAATCTTTTCTTTGTTAAAAATTATTGGCA GAAAATCAATTCTGAAGAAAAAATACCTTCTAATAATTCAGTAATAAAAGAAGACCGAAGCGTAAACTATTTTGGTTTTG GAGATGGATTCCGTTTTAAATTCAATGAACAATTTGCAGCGAGATTAACGTACGAATATGCTACCCGCCTGCCGCAGACA GATGAATTGTTTGGAGACGGTCAATTTATACAGGGTAATCTAAACTTAAAACCGGAACGCAGTCACAACATCAATTTTGA ACTTTTCTTCAAGTCAAAAGAAAATTATGAAAAGAGTACCTGGCAGGTTCAGACCAATCTTTTTTTAAGAAAAATAGACA ATCAAATCTTATTTGTTCCAAGTCTCGATCGTAATAATATCTATCAAAATGTATTTGCAGCGACTTCTAAAGGAATTGAA GTGGCCGGAAGCTGGACTTCTAAAAACGACAGACTTTCATTTCACGCAAACAGTACGTACCAGCATTTTTATAATGACTC AAACGAAGGAATATTTGCCGCTTATAAAGGAGACAGAGTACCAAATCAGCCTTACTTTTTTGCTAACGGAGGCGCAGCTT ATTCTTTTCATAACCTAATTGGCAAATCTGATAAATTATCCTTTTTCCTTGATGCAAGATATGTATATGAATTTTTTAGA AGCTGGGAAAGTGCTTCTGTAAATCCGTTTGTAATCCCAAGCCAGAAGACTTTTGATTTTGGATCAACGTATCATAACAG CTTTAACGGAGTTAAATATGCCTTAACCGCAGAAATACAAAACTTAAGCAATGAAAAAAATTATGACTTTTTTGGAGTAC AAAAACCGGGAAGATCATTCAATATAAAATTAGTAACCCAATTTTAA
Upstream 100 bases:
>100_bases GATATTTTTCTGTGATTAGGATATTATTAATAGATAATTTCATACTTTTGAATTTTTATTTATTCTAAATAAGGATAGTT AATAATTCTAAGTATATTTC
Downstream 100 bases:
>100_bases TTTAATTATATAACCAATCAGTATGAAAACAAATCGATTTTTTATAAAAAATGCTGCATTAGCCATAATGTGTTCTTTAT TTGCATTAACATCGTGCAGC
Product: TonB-dependent receptor, plug
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MNLKIVLLFLFSSTFLIAQNRISGKVNDEHGNPLSGVNIQLLGTQINAATNADGFYQIENLAKGSYTIEISLDGYVSKKQ TIVLENSVNTTVALTLEKAHTSKEAEKLNDVVVKGVSEKRKKEETAEAVSVIEMKEAKFKTADLGEVLAQTQGINVRRTG GLGSRTNFSMNGLTGNQIRFFLEGIPLEYHGYTFGISTVPVNLVDRVEVYKGVVPIEFGADALGGAVNLITPKIKSGFSG SFSAQAGSFGTYRTSLILSDYNKKTGFFIKGNGFYDASKNNYKVDVDVPDDAGKIKKVTVPRFHDAYKGYGLQLVTGVKD RIWAKELSIEGFYTDYTKEIQHNQLMVGVPYGEVMTYRKSAGTVLTYRNDFSENFNLDFISGYNYRERQFKDVSDYVYNW YGERIEGSAGNIKGEISESTGPSDTYTWNNDVFSRLKASWKINEQYAVSFTSAPTYSKQTGDDRLIDGYDPAAAVRDLFT WVNGADFKINAFNEKLENLFFVKNYWQKINSEEKIPSNNSVIKEDRSVNYFGFGDGFRFKFNEQFAARLTYEYATRLPQT DELFGDGQFIQGNLNLKPERSHNINFELFFKSKENYEKSTWQVQTNLFLRKIDNQILFVPSLDRNNIYQNVFAATSKGIE VAGSWTSKNDRLSFHANSTYQHFYNDSNEGIFAAYKGDRVPNQPYFFANGGAAYSFHNLIGKSDKLSFFLDARYVYEFFR SWESASVNPFVIPSQKTFDFGSTYHNSFNGVKYALTAEIQNLSNEKNYDFFGVQKPGRSFNIKLVTQF
Sequences:
>Translated_788_residues MNLKIVLLFLFSSTFLIAQNRISGKVNDEHGNPLSGVNIQLLGTQINAATNADGFYQIENLAKGSYTIEISLDGYVSKKQ TIVLENSVNTTVALTLEKAHTSKEAEKLNDVVVKGVSEKRKKEETAEAVSVIEMKEAKFKTADLGEVLAQTQGINVRRTG GLGSRTNFSMNGLTGNQIRFFLEGIPLEYHGYTFGISTVPVNLVDRVEVYKGVVPIEFGADALGGAVNLITPKIKSGFSG SFSAQAGSFGTYRTSLILSDYNKKTGFFIKGNGFYDASKNNYKVDVDVPDDAGKIKKVTVPRFHDAYKGYGLQLVTGVKD RIWAKELSIEGFYTDYTKEIQHNQLMVGVPYGEVMTYRKSAGTVLTYRNDFSENFNLDFISGYNYRERQFKDVSDYVYNW YGERIEGSAGNIKGEISESTGPSDTYTWNNDVFSRLKASWKINEQYAVSFTSAPTYSKQTGDDRLIDGYDPAAAVRDLFT WVNGADFKINAFNEKLENLFFVKNYWQKINSEEKIPSNNSVIKEDRSVNYFGFGDGFRFKFNEQFAARLTYEYATRLPQT DELFGDGQFIQGNLNLKPERSHNINFELFFKSKENYEKSTWQVQTNLFLRKIDNQILFVPSLDRNNIYQNVFAATSKGIE VAGSWTSKNDRLSFHANSTYQHFYNDSNEGIFAAYKGDRVPNQPYFFANGGAAYSFHNLIGKSDKLSFFLDARYVYEFFR SWESASVNPFVIPSQKTFDFGSTYHNSFNGVKYALTAEIQNLSNEKNYDFFGVQKPGRSFNIKLVTQF >Mature_788_residues MNLKIVLLFLFSSTFLIAQNRISGKVNDEHGNPLSGVNIQLLGTQINAATNADGFYQIENLAKGSYTIEISLDGYVSKKQ TIVLENSVNTTVALTLEKAHTSKEAEKLNDVVVKGVSEKRKKEETAEAVSVIEMKEAKFKTADLGEVLAQTQGINVRRTG GLGSRTNFSMNGLTGNQIRFFLEGIPLEYHGYTFGISTVPVNLVDRVEVYKGVVPIEFGADALGGAVNLITPKIKSGFSG SFSAQAGSFGTYRTSLILSDYNKKTGFFIKGNGFYDASKNNYKVDVDVPDDAGKIKKVTVPRFHDAYKGYGLQLVTGVKD RIWAKELSIEGFYTDYTKEIQHNQLMVGVPYGEVMTYRKSAGTVLTYRNDFSENFNLDFISGYNYRERQFKDVSDYVYNW YGERIEGSAGNIKGEISESTGPSDTYTWNNDVFSRLKASWKINEQYAVSFTSAPTYSKQTGDDRLIDGYDPAAAVRDLFT WVNGADFKINAFNEKLENLFFVKNYWQKINSEEKIPSNNSVIKEDRSVNYFGFGDGFRFKFNEQFAARLTYEYATRLPQT DELFGDGQFIQGNLNLKPERSHNINFELFFKSKENYEKSTWQVQTNLFLRKIDNQILFVPSLDRNNIYQNVFAATSKGIE VAGSWTSKNDRLSFHANSTYQHFYNDSNEGIFAAYKGDRVPNQPYFFANGGAAYSFHNLIGKSDKLSFFLDARYVYEFFR SWESASVNPFVIPSQKTFDFGSTYHNSFNGVKYALTAEIQNLSNEKNYDFFGVQKPGRSFNIKLVTQF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89062; Mature: 89062
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKIVLLFLFSSTFLIAQNRISGKVNDEHGNPLSGVNIQLLGTQINAATNADGFYQIEN CCEEEEEEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECC LAKGSYTIEISLDGYVSKKQTIVLENSVNTTVALTLEKAHTSKEAEKLNDVVVKGVSEKR CCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEEEEEHHCCHHHHHHHHHHHHCCCHHHH KKEETAEAVSVIEMKEAKFKTADLGEVLAQTQGINVRRTGGLGSRTNFSMNGLTGNQIRF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEECCCCCCEEEE FLEGIPLEYHGYTFGISTVPVNLVDRVEVYKGVVPIEFGADALGGAVNLITPKIKSGFSG EEECCCEEECCEEEEEEECCCHHHHHHHHHHCCEEEEECCHHHCCEEEEECCCCCCCCCC SFSAQAGSFGTYRTSLILSDYNKKTGFFIKGNGFYDASKNNYKVDVDVPDDAGKIKKVTV CCCCCCCCCCCEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEEECCCCCCCEEEEEC PRFHDAYKGYGLQLVTGVKDRIWAKELSIEGFYTDYTKEIQHNQLMVGVPYGEVMTYRKS CCHHHHHCCCCEEEEECCHHHHHHHHEECCEEECHHHHHHCCCEEEEECCCHHHEEEECC AGTVLTYRNDFSENFNLDFISGYNYRERQFKDVSDYVYNWYGERIEGSAGNIKGEISEST CCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCC GPSDTYTWNNDVFSRLKASWKINEQYAVSFTSAPTYSKQTGDDRLIDGYDPAAAVRDLFT CCCCCEEECHHHHHHHHHCEEECCEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHH WVNGADFKINAFNEKLENLFFVKNYWQKINSEEKIPSNNSVIKEDRSVNYFGFGDGFRFK HCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCEEEE FNEQFAARLTYEYATRLPQTDELFGDGQFIQGNLNLKPERSHNINFELFFKSKENYEKST ECCCHHHHEEHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCE WQVQTNLFLRKIDNQILFVPSLDRNNIYQNVFAATSKGIEVAGSWTSKNDRLSFHANSTY EEEEHHEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCC QHFYNDSNEGIFAAYKGDRVPNQPYFFANGGAAYSFHNLIGKSDKLSFFLDARYVYEFFR HHHCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEHHHHHCCCCCEEEEEEHHHHHHHHH SWESASVNPFVIPSQKTFDFGSTYHNSFNGVKYALTAEIQNLSNEKNYDFFGVQKPGRSF HHCCCCCCEEEECCCCCCCCCCHHCCCCCCEEEEEEEEHHHCCCCCCCCEEEECCCCCEE NIKLVTQF EEEEEEEC >Mature Secondary Structure MNLKIVLLFLFSSTFLIAQNRISGKVNDEHGNPLSGVNIQLLGTQINAATNADGFYQIEN CCEEEEEEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECC LAKGSYTIEISLDGYVSKKQTIVLENSVNTTVALTLEKAHTSKEAEKLNDVVVKGVSEKR CCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEEEEEHHCCHHHHHHHHHHHHCCCHHHH KKEETAEAVSVIEMKEAKFKTADLGEVLAQTQGINVRRTGGLGSRTNFSMNGLTGNQIRF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEECCCCCCEEEE FLEGIPLEYHGYTFGISTVPVNLVDRVEVYKGVVPIEFGADALGGAVNLITPKIKSGFSG EEECCCEEECCEEEEEEECCCHHHHHHHHHHCCEEEEECCHHHCCEEEEECCCCCCCCCC SFSAQAGSFGTYRTSLILSDYNKKTGFFIKGNGFYDASKNNYKVDVDVPDDAGKIKKVTV CCCCCCCCCCCEEEEEEEECCCCCCCEEEECCEEEECCCCCEEEEEECCCCCCCEEEEEC PRFHDAYKGYGLQLVTGVKDRIWAKELSIEGFYTDYTKEIQHNQLMVGVPYGEVMTYRKS CCHHHHHCCCCEEEEECCHHHHHHHHEECCEEECHHHHHHCCCEEEEECCCHHHEEEECC AGTVLTYRNDFSENFNLDFISGYNYRERQFKDVSDYVYNWYGERIEGSAGNIKGEISEST CCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCC GPSDTYTWNNDVFSRLKASWKINEQYAVSFTSAPTYSKQTGDDRLIDGYDPAAAVRDLFT CCCCCEEECHHHHHHHHHCEEECCEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHH WVNGADFKINAFNEKLENLFFVKNYWQKINSEEKIPSNNSVIKEDRSVNYFGFGDGFRFK HCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCEEEE FNEQFAARLTYEYATRLPQTDELFGDGQFIQGNLNLKPERSHNINFELFFKSKENYEKST ECCCHHHHEEHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCE WQVQTNLFLRKIDNQILFVPSLDRNNIYQNVFAATSKGIEVAGSWTSKNDRLSFHANSTY EEEEHHEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCC QHFYNDSNEGIFAAYKGDRVPNQPYFFANGGAAYSFHNLIGKSDKLSFFLDARYVYEFFR HHHCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEHHHHHCCCCCEEEEEEHHHHHHHHH SWESASVNPFVIPSQKTFDFGSTYHNSFNGVKYALTAEIQNLSNEKNYDFFGVQKPGRSF HHCCCCCCEEEECCCCCCCCCCHHCCCCCCEEEEEEEEHHHCCCCCCCCEEEECCCCCEE NIKLVTQF EEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA