| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300899
Identifier: 146300899
GI number: 146300899
Start: 3747352
End: 3748041
Strand: Direct
Name: 146300899
Synonym: Fjoh_3154
Alternate gene names: NA
Gene position: 3747352-3748041 (Clockwise)
Preceding gene: 146300898
Following gene: 146300900
Centisome position: 61.46
GC content: 36.81
Gene sequence:
>690_bases ATGACAACTGGTGAATTAAAAAAACTGAAGATTATTGCGTACAGCGATCCGCAATTCAACAATCCCGTTTCGGATATTGA AGAGTTTGTTACTTTGATGAATCCCGAAAAATACACTTTTCATTACAAGATTGAGCAAGATACAACCCAGGCAGCCGGAA CGAGCAGTCCCGCACCAAGGTTTACTGCAATTGCTCCGGAGGAATTAGAACTGGATTTTGTTTTTGACCGAACTGGCGTT ATTGCCGGAAAGGAAAGCACAGAAAATGGTGTTATTGAAGACATTGAGCATTTTAGAAAAGTAATTTTAGAATACAACGG TACAGAACATAAGCCAAACTATTTAAAAATTGCCTGGGGAAGCCTTTTATTCAAAGGATCTCTCACAGAAATGACTATTG AGTATAAACTTTTCAGACCAGATGGTACGCCTATTAGAGCCATTGCAAAAGGAAAATTCAAAGGTGTTGTTGAAGATGAA TTAAGAGCAAAACAGCAAAACAATCAATCACCAGATTTAACGCATACCAGAATTGTAAAAGCGGGCGATACGCTTCCGTT AATGTCTTTTAAAATCTATGGCGATTCAAAATATTATCTCGAAGTAGCAAAAGCCAATAAGCTTATCAATTTCAGAAAAT TAAAAATCGGCCAGAAAATATTTTTTCCTCCACTGCAAAAACAACAATAG
Upstream 100 bases:
>100_bases AAACCAGCTGCTTCATCTTCATTAAACAATGAAAAAGATACTGTGGCTGAGTGTGTCGAGCAAGTAATGAAAATTATTGA ACGTAAAAAAGAACGCTGAT
Downstream 100 bases:
>100_bases ATGAACAATAGCGGCGTCATACAAACCAGTAAAAGTGCAGATTTAGTTACGCACAAACTGCTCATTGAAGGAAATGAACT GTCTGGTGTTTATCAGGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MTTGELKKLKIIAYSDPQFNNPVSDIEEFVTLMNPEKYTFHYKIEQDTTQAAGTSSPAPRFTAIAPEELELDFVFDRTGV IAGKESTENGVIEDIEHFRKVILEYNGTEHKPNYLKIAWGSLLFKGSLTEMTIEYKLFRPDGTPIRAIAKGKFKGVVEDE LRAKQQNNQSPDLTHTRIVKAGDTLPLMSFKIYGDSKYYLEVAKANKLINFRKLKIGQKIFFPPLQKQQ
Sequences:
>Translated_229_residues MTTGELKKLKIIAYSDPQFNNPVSDIEEFVTLMNPEKYTFHYKIEQDTTQAAGTSSPAPRFTAIAPEELELDFVFDRTGV IAGKESTENGVIEDIEHFRKVILEYNGTEHKPNYLKIAWGSLLFKGSLTEMTIEYKLFRPDGTPIRAIAKGKFKGVVEDE LRAKQQNNQSPDLTHTRIVKAGDTLPLMSFKIYGDSKYYLEVAKANKLINFRKLKIGQKIFFPPLQKQQ >Mature_228_residues TTGELKKLKIIAYSDPQFNNPVSDIEEFVTLMNPEKYTFHYKIEQDTTQAAGTSSPAPRFTAIAPEELELDFVFDRTGVI AGKESTENGVIEDIEHFRKVILEYNGTEHKPNYLKIAWGSLLFKGSLTEMTIEYKLFRPDGTPIRAIAKGKFKGVVEDEL RAKQQNNQSPDLTHTRIVKAGDTLPLMSFKIYGDSKYYLEVAKANKLINFRKLKIGQKIFFPPLQKQQ
Specific function: Unknown
COG id: COG1652
COG function: function code S; Uncharacterized protein containing LysM domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26098; Mature: 25967
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGELKKLKIIAYSDPQFNNPVSDIEEFVTLMNPEKYTFHYKIEQDTTQAAGTSSPAPR CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC FTAIAPEELELDFVFDRTGVIAGKESTENGVIEDIEHFRKVILEYNGTEHKPNYLKIAWG EEEECCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE SLLFKGSLTEMTIEYKLFRPDGTPIRAIAKGKFKGVVEDELRAKQQNNQSPDLTHTRIVK EEEEECCCEEEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE AGDTLPLMSFKIYGDSKYYLEVAKANKLINFRKLKIGQKIFFPPLQKQQ CCCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCEEECCCCCCCC >Mature Secondary Structure TTGELKKLKIIAYSDPQFNNPVSDIEEFVTLMNPEKYTFHYKIEQDTTQAAGTSSPAPR CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC FTAIAPEELELDFVFDRTGVIAGKESTENGVIEDIEHFRKVILEYNGTEHKPNYLKIAWG EEEECCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE SLLFKGSLTEMTIEYKLFRPDGTPIRAIAKGKFKGVVEDELRAKQQNNQSPDLTHTRIVK EEEEECCCEEEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE AGDTLPLMSFKIYGDSKYYLEVAKANKLINFRKLKIGQKIFFPPLQKQQ CCCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA