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The map label for this gene is araC [C]

Identifier: 146300774

GI number: 146300774

Start: 3579129

End: 3579977

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_3025

Alternate gene names: 146300774

Gene position: 3579977-3579129 (Counterclockwise)

Preceding gene: 146300775

Following gene: 146300773

Centisome position: 58.72

GC content: 48.06

Gene sequence:

>849_bases
TTGAATACACTAACAGACAGTCTTTGGCGGGATAACCTTAAGGTGGTCTACCTTTATGATATCGGATCGGCCAAAGCGCT
TTCCAAATTTATGGTTCCAGGCTGGATTACCCTTGTGGCAGTGGTGTCGGGTTCCATCAGGTTCTCAGAATCTTTATGCG
GTGCGGAAATTTCTGCTGGTGATATTTATGCAGTTCCAGGCCGTGCCGAGGTCGATTCCTTCTCGGGAGTTCTCCGCATA
TGGCTGGTATCCTGCACTGCAGAATTTGCCGTTTCCAGCAGGATAGTAAGGTTCGGTGCCGGCTATATGGAAATTTTTGC
CCGACAGGAATCTCCTGTTCTTGCAGTTAACGGAAAAGAACTGCGGCATGTCATATTGCTTCTGCGGCTGCTGAAGAAAA
AGATCGGCAGCAGGCATGCAGTGTTCAAGGACGAAATGGTGCTGCTGTATTTCAATATGATTGTCTACGAGTACATCGAT
CTGCGCTACAAATACGGCAAAAATAAGGCAATTCTCCACTACCGGAACGATAAGATCGTAATGGATTTTATCAGCCTGGT
GCAGCAGAATTCGTCGAGGCACCATGATGTGAAATTTTATGCTGAGTGCCTGTTTGTCAGCAGCGGCCATCTGGGCAAAG
CCGTAAAAGCAGTTTTGGGAATCTCCGCCAAACGTTTTATAGAAATGGCCGTACTGTCGGAGGCCTATCTGCTTCTGGCC
GATACGCAGCTTTCCGTTTCCGAGCTTGCCGAACATCTCAACTTTGACAGCCCTGCGGCGTTCAGCGGCTTTTTCAAAAA
GAATACCAGACTTTCACCCACCCAGTACCGTCTGAGCCTCAAGTTTTAA

Upstream 100 bases:

>100_bases
TATCTTCTTTGTGACATGCGGCTGGCTTGCAGGAAAAAAAGCCGGTCCTTGAAAGATACAGGCTCTTCAAGTAAAATGAT
ATACAAATACAATCAATATT

Downstream 100 bases:

>100_bases
TACAGCACCTATTCGATTATGCTAATAAATTCAACTAACCGTATTATCTTTTACCAGCAGGTTTGCTTTTGAGAACGGCG
TAATGACTGTTTCTGCTGCC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; AraC-Family Regulatory Protein; Transcriptional Regulator Arac Family; AraC-Family Transcriptional Regulator

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNTLTDSLWRDNLKVVYLYDIGSAKALSKFMVPGWITLVAVVSGSIRFSESLCGAEISAGDIYAVPGRAEVDSFSGVLRI
WLVSCTAEFAVSSRIVRFGAGYMEIFARQESPVLAVNGKELRHVILLLRLLKKKIGSRHAVFKDEMVLLYFNMIVYEYID
LRYKYGKNKAILHYRNDKIVMDFISLVQQNSSRHHDVKFYAECLFVSSGHLGKAVKAVLGISAKRFIEMAVLSEAYLLLA
DTQLSVSELAEHLNFDSPAAFSGFFKKNTRLSPTQYRLSLKF

Sequences:

>Translated_282_residues
MNTLTDSLWRDNLKVVYLYDIGSAKALSKFMVPGWITLVAVVSGSIRFSESLCGAEISAGDIYAVPGRAEVDSFSGVLRI
WLVSCTAEFAVSSRIVRFGAGYMEIFARQESPVLAVNGKELRHVILLLRLLKKKIGSRHAVFKDEMVLLYFNMIVYEYID
LRYKYGKNKAILHYRNDKIVMDFISLVQQNSSRHHDVKFYAECLFVSSGHLGKAVKAVLGISAKRFIEMAVLSEAYLLLA
DTQLSVSELAEHLNFDSPAAFSGFFKKNTRLSPTQYRLSLKF
>Mature_282_residues
MNTLTDSLWRDNLKVVYLYDIGSAKALSKFMVPGWITLVAVVSGSIRFSESLCGAEISAGDIYAVPGRAEVDSFSGVLRI
WLVSCTAEFAVSSRIVRFGAGYMEIFARQESPVLAVNGKELRHVILLLRLLKKKIGSRHAVFKDEMVLLYFNMIVYEYID
LRYKYGKNKAILHYRNDKIVMDFISLVQQNSSRHHDVKFYAECLFVSSGHLGKAVKAVLGISAKRFIEMAVLSEAYLLLA
DTQLSVSELAEHLNFDSPAAFSGFFKKNTRLSPTQYRLSLKF

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31777; Mature: 31777

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLTDSLWRDNLKVVYLYDIGSAKALSKFMVPGWITLVAVVSGSIRFSESLCGAEISAG
CCCHHHHHHHCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHCCCEEHHHHCCCCCCCC
DIYAVPGRAEVDSFSGVLRIWLVSCTAEFAVSSRIVRFGAGYMEIFARQESPVLAVNGKE
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEECCHH
LRHVILLLRLLKKKIGSRHAVFKDEMVLLYFNMIVYEYIDLRYKYGKNKAILHYRNDKIV
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCHH
MDFISLVQQNSSRHHDVKFYAECLFVSSGHLGKAVKAVLGISAKRFIEMAVLSEAYLLLA
HHHHHHHHCCCCCCCCHHEEEEEHEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHEEEEE
DTQLSVSELAEHLNFDSPAAFSGFFKKNTRLSPTQYRLSLKF
CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNTLTDSLWRDNLKVVYLYDIGSAKALSKFMVPGWITLVAVVSGSIRFSESLCGAEISAG
CCCHHHHHHHCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHCCCEEHHHHCCCCCCCC
DIYAVPGRAEVDSFSGVLRIWLVSCTAEFAVSSRIVRFGAGYMEIFARQESPVLAVNGKE
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEECCHH
LRHVILLLRLLKKKIGSRHAVFKDEMVLLYFNMIVYEYIDLRYKYGKNKAILHYRNDKIV
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCHH
MDFISLVQQNSSRHHDVKFYAECLFVSSGHLGKAVKAVLGISAKRFIEMAVLSEAYLLLA
HHHHHHHHCCCCCCCCHHEEEEEHEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHEEEEE
DTQLSVSELAEHLNFDSPAAFSGFFKKNTRLSPTQYRLSLKF
CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA