| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is traC [H]
Identifier: 146300753
GI number: 146300753
Start: 3550902
End: 3553415
Strand: Reverse
Name: traC [H]
Synonym: Fjoh_3004
Alternate gene names: 146300753
Gene position: 3553415-3550902 (Counterclockwise)
Preceding gene: 146300754
Following gene: 146300752
Centisome position: 58.28
GC content: 53.62
Gene sequence:
>2514_bases ATGAGGAATTCGTCAAAGACAGCAACGCTGGAGAGCAGATTACCCCTGCTGGCGGTGGAGCAGAACTGCATCATCTCCAA GGATGGGGATGTTACGGCCTGCTTTGCCGTATCGCTTCCGGAGCTTTTTACTGCGGGATCGGCAGATTATGAGGCCATCC ATTCCGCCTGGCACAAGGCGGTGAAGACCCTGCCTGATTTTACGGTCGTGCACAAGCAGGACTGGTATGTCAAGGAAAAC TACAATCCGAATATGGAGGGGGAGGAACAGAGTTTCCTTGCAAGAACCTTCGAGAGGCATTTCAACGAACGCCCGTTCCT GAACCACTGCTGCTATCTGTTCCTCACCAAGACCACACGGGAAAGGATGAGGATGCAGAGCAATTTCTCATCGCTCTGCA GGGGAACGCTGATTCCGAAAGAAGTCAGGGATCCAGAGGCTATCAGGAGATTTATGGAGACTGTGGCGCAGTTTGAGCGC ATCCTCAACGACAGCGGGCTTATCAGGCTCAATAGGCTGACGGAAGAAGACCTGACGGGAGCCGATCACAGGCAGGGGAT ACTGGAGCAGTACCTTACCCTTTCCAAAGAGGAGGGCGCATCATTGGAAGATATCGCCTTGGGAGCTGAGCAGGTTAGGG TGGGTTCCAAAAGGCTTTCGCTGCATACGCTTTCCGATACGGACGACCTCCCTGCGGCTGTTGCATCCGATACCCGCTAC GAGAAGCTCTCGACCGACCGCAGCGACTGCCGCCTGTCTTTTGCCGCTCCAGTCGGCCTTCTTCTGGGCTGCAACCATAT CTACAACCAGTACCTGTTTCTGGACAGCAGCGAGGAGAACCTGCAGAAGTTCGAGAAGTCGGCGCGAAACATGCATTCCC TTGCACGCTACAGCAGGGCGAACCAGATCAATAGGGAATGGATAGAGAAATACCTGAACGAGGCGCATTCGTTGGGGCTC AGTTCCATCAGGGCGCATTTCAACATTATGGCATGGTCGGATGATCCTGCAGAGCTCAAACAGCTCAAGAATGACTGCGG CAGCGCTCTGGCGCTGATGGAATGCAAACCGAGGCACAACACGGCTGACGCCGCGACGCTGTATTGGGCGGGAATGCCGG GCAATGCGGGCGATTTCCCATGCGAGGAAAGCTTCTACACCTTCATTGAGCCTGCGCTGTGCCTGTTCACACAGGAAACG AACTACCGCAGCTCCCCATCGCCGTTCGGCATCAAGATGGCCGACAGGCTCACCGGCAGACCGATCCATCTGGATATTTC GGACCTGCCCATGAAGCGCGGGATCATCACCAACCGCAACAAGTTCATCCTCGGGCCTTCGGGAAGCGGGAAGTCCTTCT TTACCAACCATATGGTCAGGCAGTACTACGAGCAGGGTGCGCATGTGCTTCTGGTGGATACAGGGAATTCCTATCAGGGA CTGTGCGGGCTGATCAACAGCAGGACCCGAGGGGAGGACGGTGTCTACTTCACCTACACGGAGGACAATCCCATTGCCTT CAACCCCTTCTATACCGATGACAAGGTATTCGATATAGAGAAAAGGGAAAGCATCAAAACCCTGATAATGACCCTGTGGA AGCGGGATGACGAGCCTCCGACGCGTTCGGAGGAAGTGGCGCTTTCCAATGCCGTGAACGGCTACATCGAGCTGATCAGG GACAATGGGCTGGCTCCATCCTTCAACGGATTCTACGAGTACGTAAAGGGGGATTACCACGAAATCCTGAAAGAGAAGCA GGTGCGCGAGAAGGACTTTGACATCGCCAATTTTCTGAATGTGCTGGAGCCGTATTACAGGGGAGGCGAGTACGATTACC TGCTGAATTCGGACAGGCAGCTGGACCTGCTGGCTAAACGGTTTATAGTCTTTGAAATCGATGCGATAAAGGACCACAAG ATCCTGTTTCCCATAGTGACGATCATCATCATGGAGGTCTTCATCAACAAGATGAGAAGGCTGAAGGGGGTGCGCAAGCT GATCCTTATCGAGGAGGCTTGGAAGGCGATCGCCAAGGAAGGAATGGCCGAGTACATAAAGTACCTTTTCAAGACCGTGC GCAAGTTCTTCGGCGAGGCCATAGTGGTGACCCAGGAAGTGGACGATATCATCAAATCTCCCATTGTGAAGGAGAGCATC ATCAACAATTCCGACTGCAAGATCCTTCTGGACCAGCGCAAGTACATGAACAAATTCGATGACATACAGGCGATGCTCGG ACTTACCGACAAGGAAAAGGCGCAGGTGCTTTCGATCAATATGAACAACAGTCCCTCTCGTCTCTACAAGGAAGTCTGGA TAGGTCTGGGAGGAACCCAGTCCGCGGTGTATGCCACCGAGGTGAGCCTGGAGGAATACCTGGCCTACACGACCGAGGAA ACCGAAAAGATGGAGGTCATGCAGGCGGCTGCAGAGCTGGACGGTAACGTCGAGCTAGCCATCAGGCATATTGCGAAGCT GAGATGGGAGAGGGAAAACGAGAATAATCAATAA
Upstream 100 bases:
>100_bases GGCTGATGAAGATCGCGGCAGGGAAAAGACATCCGCGCTACATCGTGTGCCGCAGGTCGGTACGAAGATGTTTGAAATGT TCAGCCAAATCCGCCGCCTT
Downstream 100 bases:
>100_bases TCCAAAATCTATAGAAAATGAAAAAAATGCTATCAATGGCGTTTGCGGCAGTCATGCTTGCCGCTGCGCCGTGCGCAAAA GCGCAGTTTGTGGTTACAGA
Product: Type IV secretory pathway VirB4 components-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MRNSSKTATLESRLPLLAVEQNCIISKDGDVTACFAVSLPELFTAGSADYEAIHSAWHKAVKTLPDFTVVHKQDWYVKEN YNPNMEGEEQSFLARTFERHFNERPFLNHCCYLFLTKTTRERMRMQSNFSSLCRGTLIPKEVRDPEAIRRFMETVAQFER ILNDSGLIRLNRLTEEDLTGADHRQGILEQYLTLSKEEGASLEDIALGAEQVRVGSKRLSLHTLSDTDDLPAAVASDTRY EKLSTDRSDCRLSFAAPVGLLLGCNHIYNQYLFLDSSEENLQKFEKSARNMHSLARYSRANQINREWIEKYLNEAHSLGL SSIRAHFNIMAWSDDPAELKQLKNDCGSALALMECKPRHNTADAATLYWAGMPGNAGDFPCEESFYTFIEPALCLFTQET NYRSSPSPFGIKMADRLTGRPIHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG LCGLINSRTRGEDGVYFTYTEDNPIAFNPFYTDDKVFDIEKRESIKTLIMTLWKRDDEPPTRSEEVALSNAVNGYIELIR DNGLAPSFNGFYEYVKGDYHEILKEKQVREKDFDIANFLNVLEPYYRGGEYDYLLNSDRQLDLLAKRFIVFEIDAIKDHK ILFPIVTIIIMEVFINKMRRLKGVRKLILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVDDIIKSPIVKESI INNSDCKILLDQRKYMNKFDDIQAMLGLTDKEKAQVLSINMNNSPSRLYKEVWIGLGGTQSAVYATEVSLEEYLAYTTEE TEKMEVMQAAAELDGNVELAIRHIAKLRWERENENNQ
Sequences:
>Translated_837_residues MRNSSKTATLESRLPLLAVEQNCIISKDGDVTACFAVSLPELFTAGSADYEAIHSAWHKAVKTLPDFTVVHKQDWYVKEN YNPNMEGEEQSFLARTFERHFNERPFLNHCCYLFLTKTTRERMRMQSNFSSLCRGTLIPKEVRDPEAIRRFMETVAQFER ILNDSGLIRLNRLTEEDLTGADHRQGILEQYLTLSKEEGASLEDIALGAEQVRVGSKRLSLHTLSDTDDLPAAVASDTRY EKLSTDRSDCRLSFAAPVGLLLGCNHIYNQYLFLDSSEENLQKFEKSARNMHSLARYSRANQINREWIEKYLNEAHSLGL SSIRAHFNIMAWSDDPAELKQLKNDCGSALALMECKPRHNTADAATLYWAGMPGNAGDFPCEESFYTFIEPALCLFTQET NYRSSPSPFGIKMADRLTGRPIHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG LCGLINSRTRGEDGVYFTYTEDNPIAFNPFYTDDKVFDIEKRESIKTLIMTLWKRDDEPPTRSEEVALSNAVNGYIELIR DNGLAPSFNGFYEYVKGDYHEILKEKQVREKDFDIANFLNVLEPYYRGGEYDYLLNSDRQLDLLAKRFIVFEIDAIKDHK ILFPIVTIIIMEVFINKMRRLKGVRKLILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVDDIIKSPIVKESI INNSDCKILLDQRKYMNKFDDIQAMLGLTDKEKAQVLSINMNNSPSRLYKEVWIGLGGTQSAVYATEVSLEEYLAYTTEE TEKMEVMQAAAELDGNVELAIRHIAKLRWERENENNQ >Mature_837_residues MRNSSKTATLESRLPLLAVEQNCIISKDGDVTACFAVSLPELFTAGSADYEAIHSAWHKAVKTLPDFTVVHKQDWYVKEN YNPNMEGEEQSFLARTFERHFNERPFLNHCCYLFLTKTTRERMRMQSNFSSLCRGTLIPKEVRDPEAIRRFMETVAQFER ILNDSGLIRLNRLTEEDLTGADHRQGILEQYLTLSKEEGASLEDIALGAEQVRVGSKRLSLHTLSDTDDLPAAVASDTRY EKLSTDRSDCRLSFAAPVGLLLGCNHIYNQYLFLDSSEENLQKFEKSARNMHSLARYSRANQINREWIEKYLNEAHSLGL SSIRAHFNIMAWSDDPAELKQLKNDCGSALALMECKPRHNTADAATLYWAGMPGNAGDFPCEESFYTFIEPALCLFTQET NYRSSPSPFGIKMADRLTGRPIHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG LCGLINSRTRGEDGVYFTYTEDNPIAFNPFYTDDKVFDIEKRESIKTLIMTLWKRDDEPPTRSEEVALSNAVNGYIELIR DNGLAPSFNGFYEYVKGDYHEILKEKQVREKDFDIANFLNVLEPYYRGGEYDYLLNSDRQLDLLAKRFIVFEIDAIKDHK ILFPIVTIIIMEVFINKMRRLKGVRKLILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVDDIIKSPIVKESI INNSDCKILLDQRKYMNKFDDIQAMLGLTDKEKAQVLSINMNNSPSRLYKEVWIGLGGTQSAVYATEVSLEEYLAYTTEE TEKMEVMQAAAELDGNVELAIRHIAKLRWERENENNQ
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 95908; Mature: 95908
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNSSKTATLESRLPLLAVEQNCIISKDGDVTACFAVSLPELFTAGSADYEAIHSAWHKA CCCCCCCCCHHHCCCEEEECCCEEEECCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHH VKTLPDFTVVHKQDWYVKENYNPNMEGEEQSFLARTFERHFNERPFLNHCCYLFLTKTTR HHHCCCEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ERMRMQSNFSSLCRGTLIPKEVRDPEAIRRFMETVAQFERILNDSGLIRLNRLTEEDLTG HHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCC ADHRQGILEQYLTLSKEEGASLEDIALGAEQVRVGSKRLSLHTLSDTDDLPAAVASDTRY CHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCCEEEEEECCCCCCCCHHHHCCCHH EKLSTDRSDCRLSFAAPVGLLLGCNHIYNQYLFLDSSEENLQKFEKSARNMHSLARYSRA HHHCCCHHHCEEEEHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH NQINREWIEKYLNEAHSLGLSSIRAHFNIMAWSDDPAELKQLKNDCGSALALMECKPRHN HHCCHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHHHHHHHHHCCEEEEEECCCCCC TADAATLYWAGMPGNAGDFPCEESFYTFIEPALCLFTQETNYRSSPSPFGIKMADRLTGR CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHCCCC PIHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG EEEEEHHHCCCCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCH LCGLINSRTRGEDGVYFTYTEDNPIAFNPFYTDDKVFDIEKRESIKTLIMTLWKRDDEPP HHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCC TRSEEVALSNAVNGYIELIRDNGLAPSFNGFYEYVKGDYHEILKEKQVREKDFDIANFLN CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH VLEPYYRGGEYDYLLNSDRQLDLLAKRFIVFEIDAIKDHKILFPIVTIIIMEVFINKMRR HHHHHHCCCCEEEEECCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH LKGVRKLILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVDDIIKSPIVKESI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCHHHHH INNSDCKILLDQRKYMNKFDDIQAMLGLTDKEKAQVLSINMNNSPSRLYKEVWIGLGGTQ CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCC SAVYATEVSLEEYLAYTTEETEKMEVMQAAAELDGNVELAIRHIAKLRWERENENNQ CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRNSSKTATLESRLPLLAVEQNCIISKDGDVTACFAVSLPELFTAGSADYEAIHSAWHKA CCCCCCCCCHHHCCCEEEECCCEEEECCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHH VKTLPDFTVVHKQDWYVKENYNPNMEGEEQSFLARTFERHFNERPFLNHCCYLFLTKTTR HHHCCCEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ERMRMQSNFSSLCRGTLIPKEVRDPEAIRRFMETVAQFERILNDSGLIRLNRLTEEDLTG HHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCC ADHRQGILEQYLTLSKEEGASLEDIALGAEQVRVGSKRLSLHTLSDTDDLPAAVASDTRY CHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCCEEEEEECCCCCCCCHHHHCCCHH EKLSTDRSDCRLSFAAPVGLLLGCNHIYNQYLFLDSSEENLQKFEKSARNMHSLARYSRA HHHCCCHHHCEEEEHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH NQINREWIEKYLNEAHSLGLSSIRAHFNIMAWSDDPAELKQLKNDCGSALALMECKPRHN HHCCHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHHHHHHHHHCCEEEEEECCCCCC TADAATLYWAGMPGNAGDFPCEESFYTFIEPALCLFTQETNYRSSPSPFGIKMADRLTGR CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHCCCC PIHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG EEEEEHHHCCCCCCEEECCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCH LCGLINSRTRGEDGVYFTYTEDNPIAFNPFYTDDKVFDIEKRESIKTLIMTLWKRDDEPP HHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCC TRSEEVALSNAVNGYIELIRDNGLAPSFNGFYEYVKGDYHEILKEKQVREKDFDIANFLN CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH VLEPYYRGGEYDYLLNSDRQLDLLAKRFIVFEIDAIKDHKILFPIVTIIIMEVFINKMRR HHHHHHCCCCEEEEECCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH LKGVRKLILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQEVDDIIKSPIVKESI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCHHHHH INNSDCKILLDQRKYMNKFDDIQAMLGLTDKEKAQVLSINMNNSPSRLYKEVWIGLGGTQ CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCC SAVYATEVSLEEYLAYTTEETEKMEVMQAAAELDGNVELAIRHIAKLRWERENENNQ CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]