| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300727
Identifier: 146300727
GI number: 146300727
Start: 3528932
End: 3530527
Strand: Reverse
Name: 146300727
Synonym: Fjoh_2978
Alternate gene names: NA
Gene position: 3530527-3528932 (Counterclockwise)
Preceding gene: 146300746
Following gene: 146300724
Centisome position: 57.91
GC content: 44.99
Gene sequence:
>1596_bases ATGGGAGAAAATTATAAAATGGAACTGGCGGAAGCTGTTGAGATGGCTAAGCAGGAACTTTATGGTATTCCTGGCGTCCT AAATATTGAGCAGGGCTTTAGATTTAAAAATGGATGGATTACGGACGAAGAGGTCATCTCTGTGCAAGTTGCGGAAAAAA TTAATGAAAAGACGCTGCTTGAACTGGCGGTGAAACCTCTGCCTGCAGAGTTCATGGGATACGGAATCGATGTGGTGGCT GCGGGATTCGAACAGCAGCTTGAATATTTGGGGGTGGATGTAAGCTTTTGGGCTGCGCCAAAGCCAGGCAATTATCGTGA GCCTGCAAATATTGGGCTGCCCCGTGTAGTTGAGTATATGGAAGCGGTTTTTCATGTTAGCCCTGATTCGGGATGGCCAA ATCTGAAGGATTTTCTTAAAAGAGTAAGCAGCAGGCTTACTGCAACCATGTACGAGTGGGAGGCTGAGCACATTAGTTCG GCAATTTTTGAGGCTGTGCAAAACTGCAACGGGAGCCTTAGAATGGTTACCCAAAACGATGGCACTGATAGAGCGGTGAA TAATATGAAGAGCCGTCTAGGGAGTAAATTTGAGCATGTCTGGTCATCTGTAGGAAGCGGCAAATTAATTGCGAGCGACT ATCATATAAAAGTAGCAGCGCGAGATGATGAGGAGTTCTGGCTGAGCAGCGGAAATTGGAAGAATTCGAACCAAGCCGAT ATTGATCCGGCAGGCAAGGGCCAGGCTATTCCCGGACCGCTTGCGAAACATAACCGGGAGTGGAATGTGGTAATAAAAAA TGCGACGTTGGCTACCATTTTCAGAAAGTACATAGATTGGGATTATCAGGAAGCGCTGCGTGTGCCTTTCGATGTTAAAG AAAAGCTCGCAAATTCCTATGTCTTTATCTCTAAGGGGATCTGTCCTCCAGTACCTCCGATAGTAAGATATTTTAAGCCG TTGACAGTTAAGCGCATACTTGATGTGCAGCCTCTGCTGACTCCGGATAAAAATTCTGAGGGCCAGCGTATGTTCCTTTA TCATGCGACAGAAATGGTTAAAAGTGCAAAGGTTAGCATTGACATTGAAAACCAGTCTTTTTCATTATTGGAGAACAACG ATCCTGTTTATGAAAGCTTTTACAGGGCGGTTGTCGAAAAGCAGAGCAATGGCGTGGCGGTGAGGATAATTTTCAGGGAT CCGCGTGAATTTGGGGCTAAAGGGCAGGCTGGTTTGGTTAAAACACTCACAAGGCTTAAAAAATTTGGCTTTAATACTGA TAATATAAAAGTACAGTGCCGATGCCATACCAAAGCAATAATTGTTGATTCTTCAGACCAAGCCAATGCTCAGGTTTTAT TCGGAAGCCATAATTTAACCACGACGGGAGCCATGTACAACAGGGACGCCAGCTTATTGATAAGAGACAGGCCAGTGGCG CAATATTTTCAGGAGATTTTTGATTTCGACTGGAGCAATTTAGCGGTTCAGCAGACTGTCGAAGGCCTTACTGCTGTAAA ACTTGCTTTAGCGTCAGAAGCGGCGCCGGAAGGATTTAGAAAGGTTCTGCTTTCTGAAATTTTAGGAGAAGCTTAG
Upstream 100 bases:
>100_bases TGGGCGCAGATTTGAATTGTATAAGATTCGATACCTGAATTAAACTAAGATGAATATTGGTTGGAACATAAATATTAAGT GTCATTTAATATGATTTGTT
Downstream 100 bases:
>100_bases GTAAATGAAACAGGTTTAAGATTTTTCAAAATCTAAATCTGTGCAAGACGATTATCTTTACTGTAAACGCTCGGCAAAAT CCAGGATCTTGCTGCCGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MGENYKMELAEAVEMAKQELYGIPGVLNIEQGFRFKNGWITDEEVISVQVAEKINEKTLLELAVKPLPAEFMGYGIDVVA AGFEQQLEYLGVDVSFWAAPKPGNYREPANIGLPRVVEYMEAVFHVSPDSGWPNLKDFLKRVSSRLTATMYEWEAEHISS AIFEAVQNCNGSLRMVTQNDGTDRAVNNMKSRLGSKFEHVWSSVGSGKLIASDYHIKVAARDDEEFWLSSGNWKNSNQAD IDPAGKGQAIPGPLAKHNREWNVVIKNATLATIFRKYIDWDYQEALRVPFDVKEKLANSYVFISKGICPPVPPIVRYFKP LTVKRILDVQPLLTPDKNSEGQRMFLYHATEMVKSAKVSIDIENQSFSLLENNDPVYESFYRAVVEKQSNGVAVRIIFRD PREFGAKGQAGLVKTLTRLKKFGFNTDNIKVQCRCHTKAIIVDSSDQANAQVLFGSHNLTTTGAMYNRDASLLIRDRPVA QYFQEIFDFDWSNLAVQQTVEGLTAVKLALASEAAPEGFRKVLLSEILGEA
Sequences:
>Translated_531_residues MGENYKMELAEAVEMAKQELYGIPGVLNIEQGFRFKNGWITDEEVISVQVAEKINEKTLLELAVKPLPAEFMGYGIDVVA AGFEQQLEYLGVDVSFWAAPKPGNYREPANIGLPRVVEYMEAVFHVSPDSGWPNLKDFLKRVSSRLTATMYEWEAEHISS AIFEAVQNCNGSLRMVTQNDGTDRAVNNMKSRLGSKFEHVWSSVGSGKLIASDYHIKVAARDDEEFWLSSGNWKNSNQAD IDPAGKGQAIPGPLAKHNREWNVVIKNATLATIFRKYIDWDYQEALRVPFDVKEKLANSYVFISKGICPPVPPIVRYFKP LTVKRILDVQPLLTPDKNSEGQRMFLYHATEMVKSAKVSIDIENQSFSLLENNDPVYESFYRAVVEKQSNGVAVRIIFRD PREFGAKGQAGLVKTLTRLKKFGFNTDNIKVQCRCHTKAIIVDSSDQANAQVLFGSHNLTTTGAMYNRDASLLIRDRPVA QYFQEIFDFDWSNLAVQQTVEGLTAVKLALASEAAPEGFRKVLLSEILGEA >Mature_530_residues GENYKMELAEAVEMAKQELYGIPGVLNIEQGFRFKNGWITDEEVISVQVAEKINEKTLLELAVKPLPAEFMGYGIDVVAA GFEQQLEYLGVDVSFWAAPKPGNYREPANIGLPRVVEYMEAVFHVSPDSGWPNLKDFLKRVSSRLTATMYEWEAEHISSA IFEAVQNCNGSLRMVTQNDGTDRAVNNMKSRLGSKFEHVWSSVGSGKLIASDYHIKVAARDDEEFWLSSGNWKNSNQADI DPAGKGQAIPGPLAKHNREWNVVIKNATLATIFRKYIDWDYQEALRVPFDVKEKLANSYVFISKGICPPVPPIVRYFKPL TVKRILDVQPLLTPDKNSEGQRMFLYHATEMVKSAKVSIDIENQSFSLLENNDPVYESFYRAVVEKQSNGVAVRIIFRDP REFGAKGQAGLVKTLTRLKKFGFNTDNIKVQCRCHTKAIIVDSSDQANAQVLFGSHNLTTTGAMYNRDASLLIRDRPVAQ YFQEIFDFDWSNLAVQQTVEGLTAVKLALASEAAPEGFRKVLLSEILGEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59583; Mature: 59452
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGENYKMELAEAVEMAKQELYGIPGVLNIEQGFRFKNGWITDEEVISVQVAEKINEKTLL CCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCEECCCCCCHHHHHEEHHHHHCCHHHHH ELAVKPLPAEFMGYGIDVVAAGFEQQLEYLGVDVSFWAAPKPGNYREPANIGLPRVVEYM HHHHCCCCHHHHCCCHHHHHHCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHH EAVFHVSPDSGWPNLKDFLKRVSSRLTATMYEWEAEHISSAIFEAVQNCNGSLRMVTQND HHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC GTDRAVNNMKSRLGSKFEHVWSSVGSGKLIASDYHIKVAARDDEEFWLSSGNWKNSNQAD CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEEEECCCHHHEECCCCCCCCCCCC IDPAGKGQAIPGPLAKHNREWNVVIKNATLATIFRKYIDWDYQEALRVPFDVKEKLANSY CCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCE VFISKGICPPVPPIVRYFKPLTVKRILDVQPLLTPDKNSEGQRMFLYHATEMVKSAKVSI EEEECCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHCEEEE DIENQSFSLLENNDPVYESFYRAVVEKQSNGVAVRIIFRDPREFGAKGQAGLVKTLTRLK EECCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHH KFGFNTDNIKVQCRCHTKAIIVDSSDQANAQVLFGSHNLTTTGAMYNRDASLLIRDRPVA HHCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEECCCCEECCCEECCCCEEEEECCHHH QYFQEIFDFDWSNLAVQQTVEGLTAVKLALASEAAPEGFRKVLLSEILGEA HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure GENYKMELAEAVEMAKQELYGIPGVLNIEQGFRFKNGWITDEEVISVQVAEKINEKTLL CCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCEECCCCCCHHHHHEEHHHHHCCHHHHH ELAVKPLPAEFMGYGIDVVAAGFEQQLEYLGVDVSFWAAPKPGNYREPANIGLPRVVEYM HHHHCCCCHHHHCCCHHHHHHCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHH EAVFHVSPDSGWPNLKDFLKRVSSRLTATMYEWEAEHISSAIFEAVQNCNGSLRMVTQND HHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC GTDRAVNNMKSRLGSKFEHVWSSVGSGKLIASDYHIKVAARDDEEFWLSSGNWKNSNQAD CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEEEECCCHHHEECCCCCCCCCCCC IDPAGKGQAIPGPLAKHNREWNVVIKNATLATIFRKYIDWDYQEALRVPFDVKEKLANSY CCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCE VFISKGICPPVPPIVRYFKPLTVKRILDVQPLLTPDKNSEGQRMFLYHATEMVKSAKVSI EEEECCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHCEEEE DIENQSFSLLENNDPVYESFYRAVVEKQSNGVAVRIIFRDPREFGAKGQAGLVKTLTRLK EECCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHH KFGFNTDNIKVQCRCHTKAIIVDSSDQANAQVLFGSHNLTTTGAMYNRDASLLIRDRPVA HHCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEECCCCEECCCEECCCCEEEEECCHHH QYFQEIFDFDWSNLAVQQTVEGLTAVKLALASEAAPEGFRKVLLSEILGEA HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA