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The map label for this gene is pinR [C]

Identifier: 146300724

GI number: 146300724

Start: 3525229

End: 3526779

Strand: Reverse

Name: pinR [C]

Synonym: Fjoh_2975

Alternate gene names: 146300724

Gene position: 3526779-3525229 (Counterclockwise)

Preceding gene: 146300727

Following gene: 146300723

Centisome position: 57.85

GC content: 41.46

Gene sequence:

>1551_bases
ATGAGCAAGATAGCAGATTTGTATATCAGGGTAAGCACTGATGAGCAGGCTGAGAAAGGCTTCTCTCAGCGCAATCAGGA
AGAGATGCTGAGAAAGTACTGTGGCATCAACAGAATTCAGATACGCAATGTGATTTACGAAGATCATTCGGCAAAAACTT
TCAACAGGCCGCAATGGAAAAAATTTCTTGCCGACATAAAAAAACGCAAACATAAAATAAGCCTGGTCCTTTTTATGAAA
TGGGATAGGTTCAGCCGAAACGCGGGCGATGCCTATCAGATGATAAATCAATTAAGGGCGTTGGGAGTCGAACCGCAGGC
AATTGAGCAGCCGCTGGATCTTAGTGTTCCGGAGAATAAGATGATGCTGGCATTTTATCTTGCTGCGCCTGAGGTTGAAA
ATGACCGCAGGGCGCTAAATACGTTTCAGGGCCTCAGAAGGGGCAAAAAAGAGGGCAGGCATATGGGAATGGCTCCGTAT
GGCTATGCTAACAAAGTTACCGAAGATGGAAAAAAGTATATTGCAATTGTGCCAGATAAGGCTGCAAACGTTGTTTGGGT
ATATGAACAGATTGCAAAAAATATTTTCAGTACCGAATCAATATATCAGACAGCCAAAGAAAAGGGCATGGGGATCTCTA
AGAACAACATGTGGCTGATTATAAGAAATCCATTATACTGCGGAATGATAGTAGTTCCAAAGTATCGAGATGAGGAGGAA
AGGCTTGTAAAGGGGCAGCATGATCCAATAATCAGCCAAGATCTGTTCTATAAAGTTCAGGATATACTCAATAGTAAAGC
AAGGACGTACAGGCCAAAAATCAAAACAATTGAGAATTTTCCCCTCAGGGGATTTTTTGTCTGTCCTAAATGCGGACAGA
AATTGGGAGGCAGCAAGTGCAGGGGCAGAAGCAGAGATTACTTCTATTACCACTGCGATAAAGTATGCAAGTGGAGGGTA
AATTCCGAAATGGCCAATAGTGTATTTAAAGGGCATTTAAATAAGTTCAAGCCTCTGGCCGAAGTAAGAAAATTATACAG
TGCAGTTCTGCTTGAAGCATACAGGGAACATACAGGATTGGTTATAAATGAGAAAAAGAAATCCCTGGAACAGATTGGGG
TTTACGAAAAAAAACTGGCTGTTGCCAGAAACCTGCTGGTTACCGAGAAGATAGATGCCGATGACTATCATTTAATGAAG
ACAGAATACAATGCTGAGATCAGCAGGCTTGAAAATGAGATTGGAAATGTGGATGAAGACCGAGCCGATATTGAATCTTT
AATGAACACAGGACTGCAAAACCTAATAAAGCTCGGCGAGGCCTTTGGTGACGGGTCTTTAGTCGACTCCAGAGAGATAA
TCGGTTTAATTTTTCCCGAAAATTTCACATTTCAAAACAATAAAATCCAAACCGCTAGGGTCAACGAAATGTTCAAGTGC
ATCTATCTGGTAAACAATAGATTACGGGCAAAAAAAAACGGAACAAAAGATGATATTTTTCTTTTGTCCCGAGTAGTGAC
CTCGACTGGATTCAAACCAGTAACCTTCTGA

Upstream 100 bases:

>100_bases
CTGAAGGCTTGGAGGTGACTTTTGAACAGGCTGAAGAAATCTTGTATTTCTTGAGAAAAATTGCTAATATCGCGGTGGTT
AAACATTTAAATAAAACAGA

Downstream 100 bases:

>100_bases
GCCGTAATCAGATGCGCTATTCAGTTGCGCCACGAGGCCTTTTTGTTATCAATTAGCTATTTTTTTGTAGCTTTGTTGAT
TGCTTATTGCGGGTGCAAAG

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: Site-Specific Recombinase; Resolvase Domain Protein; Recombinase; Resolvase; Cassette Chromosome Recombinase B; DNA Recombinase; Resolvase Domain; Integrase; Site-Specific DNA Recombinase; Site-Specific Integrase; Site-Specific Recombinase For Integration And Excision; Phage Site-Specific Recombinase; DNA Integration/Recombination Protein; Resolvase-Like Protein; Serine Type Site-Specific Recombinase; DNA Invertase; Resolvase Family Protein; Bacteriophage Resolvase/Recombinase; Site-Specific Resolvase Protein; Cassette Chromosome Recombinase C; Phage DNA Invertase; DNA Integration/Recombination/Invertion Protein; Site-Specific RecombinaIVCA; Resolvase N Terminal Domain Family; Phage Integrase; Resolvase Family Site-Specific Recombinase; Site-Specific Recombinase Resolvase Family; Prophage Integrase; Site-Specific Recombinase/Resolvase; Bacteriophage

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MSKIADLYIRVSTDEQAEKGFSQRNQEEMLRKYCGINRIQIRNVIYEDHSAKTFNRPQWKKFLADIKKRKHKISLVLFMK
WDRFSRNAGDAYQMINQLRALGVEPQAIEQPLDLSVPENKMMLAFYLAAPEVENDRRALNTFQGLRRGKKEGRHMGMAPY
GYANKVTEDGKKYIAIVPDKAANVVWVYEQIAKNIFSTESIYQTAKEKGMGISKNNMWLIIRNPLYCGMIVVPKYRDEEE
RLVKGQHDPIISQDLFYKVQDILNSKARTYRPKIKTIENFPLRGFFVCPKCGQKLGGSKCRGRSRDYFYYHCDKVCKWRV
NSEMANSVFKGHLNKFKPLAEVRKLYSAVLLEAYREHTGLVINEKKKSLEQIGVYEKKLAVARNLLVTEKIDADDYHLMK
TEYNAEISRLENEIGNVDEDRADIESLMNTGLQNLIKLGEAFGDGSLVDSREIIGLIFPENFTFQNNKIQTARVNEMFKC
IYLVNNRLRAKKNGTKDDIFLLSRVVTSTGFKPVTF

Sequences:

>Translated_516_residues
MSKIADLYIRVSTDEQAEKGFSQRNQEEMLRKYCGINRIQIRNVIYEDHSAKTFNRPQWKKFLADIKKRKHKISLVLFMK
WDRFSRNAGDAYQMINQLRALGVEPQAIEQPLDLSVPENKMMLAFYLAAPEVENDRRALNTFQGLRRGKKEGRHMGMAPY
GYANKVTEDGKKYIAIVPDKAANVVWVYEQIAKNIFSTESIYQTAKEKGMGISKNNMWLIIRNPLYCGMIVVPKYRDEEE
RLVKGQHDPIISQDLFYKVQDILNSKARTYRPKIKTIENFPLRGFFVCPKCGQKLGGSKCRGRSRDYFYYHCDKVCKWRV
NSEMANSVFKGHLNKFKPLAEVRKLYSAVLLEAYREHTGLVINEKKKSLEQIGVYEKKLAVARNLLVTEKIDADDYHLMK
TEYNAEISRLENEIGNVDEDRADIESLMNTGLQNLIKLGEAFGDGSLVDSREIIGLIFPENFTFQNNKIQTARVNEMFKC
IYLVNNRLRAKKNGTKDDIFLLSRVVTSTGFKPVTF
>Mature_515_residues
SKIADLYIRVSTDEQAEKGFSQRNQEEMLRKYCGINRIQIRNVIYEDHSAKTFNRPQWKKFLADIKKRKHKISLVLFMKW
DRFSRNAGDAYQMINQLRALGVEPQAIEQPLDLSVPENKMMLAFYLAAPEVENDRRALNTFQGLRRGKKEGRHMGMAPYG
YANKVTEDGKKYIAIVPDKAANVVWVYEQIAKNIFSTESIYQTAKEKGMGISKNNMWLIIRNPLYCGMIVVPKYRDEEER
LVKGQHDPIISQDLFYKVQDILNSKARTYRPKIKTIENFPLRGFFVCPKCGQKLGGSKCRGRSRDYFYYHCDKVCKWRVN
SEMANSVFKGHLNKFKPLAEVRKLYSAVLLEAYREHTGLVINEKKKSLEQIGVYEKKLAVARNLLVTEKIDADDYHLMKT
EYNAEISRLENEIGNVDEDRADIESLMNTGLQNLIKLGEAFGDGSLVDSREIIGLIFPENFTFQNNKIQTARVNEMFKCI
YLVNNRLRAKKNGTKDDIFLLSRVVTSTGFKPVTF

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59755; Mature: 59624

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIADLYIRVSTDEQAEKGFSQRNQEEMLRKYCGINRIQIRNVIYEDHSAKTFNRPQWK
CCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCHHHH
KFLADIKKRKHKISLVLFMKWDRFSRNAGDAYQMINQLRALGVEPQAIEQPLDLSVPENK
HHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCC
MMLAFYLAAPEVENDRRALNTFQGLRRGKKEGRHMGMAPYGYANKVTEDGKKYIAIVPDK
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCC
AANVVWVYEQIAKNIFSTESIYQTAKEKGMGISKNNMWLIIRNPLYCGMIVVPKYRDEEE
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEECEEEECCCCCHHH
RLVKGQHDPIISQDLFYKVQDILNSKARTYRPKIKTIENFPLRGFFVCPKCGQKLGGSKC
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCHHHHCCCCCCEEEECCHHHHHCCCCCC
RGRSRDYFYYHCDKVCKWRVNSEMANSVFKGHLNKFKPLAEVRKLYSAVLLEAYREHTGL
CCCCCCEEEEECCCHHHEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCE
VINEKKKSLEQIGVYEKKLAVARNLLVTEKIDADDYHLMKTEYNAEISRLENEIGNVDED
EEEHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCEEEECHHHHHHHHHHHHHCCCCCH
RADIESLMNTGLQNLIKLGEAFGDGSLVDSREIIGLIFPENFTFQNNKIQTARVNEMFKC
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCCCEEHHHHHHHHHH
IYLVNNRLRAKKNGTKDDIFLLSRVVTSTGFKPVTF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKIADLYIRVSTDEQAEKGFSQRNQEEMLRKYCGINRIQIRNVIYEDHSAKTFNRPQWK
CCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCHHHH
KFLADIKKRKHKISLVLFMKWDRFSRNAGDAYQMINQLRALGVEPQAIEQPLDLSVPENK
HHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCC
MMLAFYLAAPEVENDRRALNTFQGLRRGKKEGRHMGMAPYGYANKVTEDGKKYIAIVPDK
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCC
AANVVWVYEQIAKNIFSTESIYQTAKEKGMGISKNNMWLIIRNPLYCGMIVVPKYRDEEE
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEECEEEECCCCCHHH
RLVKGQHDPIISQDLFYKVQDILNSKARTYRPKIKTIENFPLRGFFVCPKCGQKLGGSKC
HHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCHHHHCCCCCCEEEECCHHHHHCCCCCC
RGRSRDYFYYHCDKVCKWRVNSEMANSVFKGHLNKFKPLAEVRKLYSAVLLEAYREHTGL
CCCCCCEEEEECCCHHHEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCE
VINEKKKSLEQIGVYEKKLAVARNLLVTEKIDADDYHLMKTEYNAEISRLENEIGNVDED
EEEHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCEEEECHHHHHHHHHHHHHCCCCCH
RADIESLMNTGLQNLIKLGEAFGDGSLVDSREIIGLIFPENFTFQNNKIQTARVNEMFKC
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCCCEEHHHHHHHHHH
IYLVNNRLRAKKNGTKDDIFLLSRVVTSTGFKPVTF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA