Click here to switch to the map view.

The map label for this gene is araC [C]

Identifier: 146300692

GI number: 146300692

Start: 3489015

End: 3489938

Strand: Direct

Name: araC [C]

Synonym: Fjoh_2943

Alternate gene names: 146300692

Gene position: 3489015-3489938 (Clockwise)

Preceding gene: 146300691

Following gene: 146300694

Centisome position: 57.23

GC content: 31.17

Gene sequence:

>924_bases
ATGCATAATCAACGTGTTTTAATAAATCCGCCTCATTTATCAAATGAAAAATCATTAAAAACACTTGTTGAAAACAGGAG
CGTTTATACGCTTAATCAATGCGAATTAAATCTTTTTGAGACTTACGAATCGTCTAATCTTGTACCGCTTAAATTCAATG
ATTTTGTGGTAACTAGTATGCTTCGCGGTAAAAAAATCATGCATCTTTTTGATGAACCCGCTTTTGATTACCTTCCGGGA
GAAACTGTAGTTGTTCCATCCAATATCGAAATGAAAATCGATTTTCCAGAAGCATCCAGAGAAAATCCCACTCAATGTCT
CGCTTTAGCTATTGATAATACTAAAATTAATGAAACTTTAAACTTCTTAAACGAGCGTTATCCAAAAGAAGGAACTGATG
CCTTCTGGCAGTTAAACTATCAGAATTATTTCTTTTATAATAATGTTGATCTTGCCGCAACGATCAACAAACTTATAAAA
GAATGTATGAGTACATCGATAACAAAAGATGCTCTTGCCGATTTAACTTTACAGGAATTATTAATTAGAATTATCCAGAC
ACAAACTGCAAAATCTATTGACGAAGGCATTGTAATTCAGTCCAATAATCCAATTTATGAAGTAACAGAATTTATAAGGC
TCAATTTAAAAGAAAATATAAATCTAAAAATCCTAAGCGAAAAAGCCTGTATGAGTACTACATCATTCTATCGCTTTTTC
AAAAGAGAATTAGGCATGAGCCCGATTGAATATATTTTAAATGAAAAAATAAAGCATGCCAAAAAACTGCTTAGAAATCC
TGGAATTCAAATAAACGAGGTTTGTTATTTATCTGGTTTTGAAGATGCGAATTATTTCATACGATTATTTAAAAAACACG
AAGGAATTACACCGAAACAATATCAGTTACTCTATGTTAATTAA

Upstream 100 bases:

>100_bases
TAAAAAACACATCGAAGAGCTGATTTAATAAAACGTTAAATCATAATTTTCTAAACATATTTTTATTAAATTTAGAGTTT
CCACTTTAAATTTAACGGCA

Downstream 100 bases:

>100_bases
GGTACTGAGATTCTAAGGTACTAAGGTTCTGAGCTTTTTTCTGCTGATTGTGTCATTTTGAACATAAAAAATAAAACCTT
AGTAGCTTAGTACCTTAGAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Two Component Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; AraC/XylS Family Transcription Factor; Two Component Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MHNQRVLINPPHLSNEKSLKTLVENRSVYTLNQCELNLFETYESSNLVPLKFNDFVVTSMLRGKKIMHLFDEPAFDYLPG
ETVVVPSNIEMKIDFPEASRENPTQCLALAIDNTKINETLNFLNERYPKEGTDAFWQLNYQNYFFYNNVDLAATINKLIK
ECMSTSITKDALADLTLQELLIRIIQTQTAKSIDEGIVIQSNNPIYEVTEFIRLNLKENINLKILSEKACMSTTSFYRFF
KRELGMSPIEYILNEKIKHAKKLLRNPGIQINEVCYLSGFEDANYFIRLFKKHEGITPKQYQLLYVN

Sequences:

>Translated_307_residues
MHNQRVLINPPHLSNEKSLKTLVENRSVYTLNQCELNLFETYESSNLVPLKFNDFVVTSMLRGKKIMHLFDEPAFDYLPG
ETVVVPSNIEMKIDFPEASRENPTQCLALAIDNTKINETLNFLNERYPKEGTDAFWQLNYQNYFFYNNVDLAATINKLIK
ECMSTSITKDALADLTLQELLIRIIQTQTAKSIDEGIVIQSNNPIYEVTEFIRLNLKENINLKILSEKACMSTTSFYRFF
KRELGMSPIEYILNEKIKHAKKLLRNPGIQINEVCYLSGFEDANYFIRLFKKHEGITPKQYQLLYVN
>Mature_307_residues
MHNQRVLINPPHLSNEKSLKTLVENRSVYTLNQCELNLFETYESSNLVPLKFNDFVVTSMLRGKKIMHLFDEPAFDYLPG
ETVVVPSNIEMKIDFPEASRENPTQCLALAIDNTKINETLNFLNERYPKEGTDAFWQLNYQNYFFYNNVDLAATINKLIK
ECMSTSITKDALADLTLQELLIRIIQTQTAKSIDEGIVIQSNNPIYEVTEFIRLNLKENINLKILSEKACMSTTSFYRFF
KRELGMSPIEYILNEKIKHAKKLLRNPGIQINEVCYLSGFEDANYFIRLFKKHEGITPKQYQLLYVN

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35695; Mature: 35695

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNQRVLINPPHLSNEKSLKTLVENRSVYTLNQCELNLFETYESSNLVPLKFNDFVVTSM
CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEEECHHHHHHH
LRGKKIMHLFDEPAFDYLPGETVVVPSNIEMKIDFPEASRENPTQCLALAIDNTKINETL
HCCCHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCHHHHHH
NFLNERYPKEGTDAFWQLNYQNYFFYNNVDLAATINKLIKECMSTSITKDALADLTLQEL
HHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LIRIIQTQTAKSIDEGIVIQSNNPIYEVTEFIRLNLKENINLKILSEKACMSTTSFYRFF
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
KRELGMSPIEYILNEKIKHAKKLLRNPGIQINEVCYLSGFEDANYFIRLFKKHEGITPKQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCC
YQLLYVN
EEEEEEC
>Mature Secondary Structure
MHNQRVLINPPHLSNEKSLKTLVENRSVYTLNQCELNLFETYESSNLVPLKFNDFVVTSM
CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEEECHHHHHHH
LRGKKIMHLFDEPAFDYLPGETVVVPSNIEMKIDFPEASRENPTQCLALAIDNTKINETL
HCCCHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCHHHHHH
NFLNERYPKEGTDAFWQLNYQNYFFYNNVDLAATINKLIKECMSTSITKDALADLTLQEL
HHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LIRIIQTQTAKSIDEGIVIQSNNPIYEVTEFIRLNLKENINLKILSEKACMSTTSFYRFF
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
KRELGMSPIEYILNEKIKHAKKLLRNPGIQINEVCYLSGFEDANYFIRLFKKHEGITPKQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCC
YQLLYVN
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA