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The map label for this gene is sigK [H]

Identifier: 146300694

GI number: 146300694

Start: 3491447

End: 3491977

Strand: Direct

Name: sigK [H]

Synonym: Fjoh_2945

Alternate gene names: 146300694

Gene position: 3491447-3491977 (Clockwise)

Preceding gene: 146300692

Following gene: 146300695

Centisome position: 57.27

GC content: 29.57

Gene sequence:

>531_bases
ATGAGTCAAGAAGAATTGTTAGTATTAATTTACAAAAAAGACGAAAGAGCTTTTACCCATTTGTACGATATGTACTCTAA
AAGTTTATTCTCAGTTATTAATGTTCTAATAAAAAATCGTGAAGAAGCCGAAGATGTTTTGCAGGAAGTTTTTGTAAAAA
TCTGGAAAAACATCGATTCATATAATGAAAGCAAGGGCCGATTTTACACCTGGATCCTTAATATAGCTAGGAATACGTCT
ATTGACAAGCTGAGATCTAAAAATTTTAATAACAGCCAAAAAAACCTTTCCTCAGATAATTTCGTAAATCTGTTAGATGA
CAGTAATAAATTAACTAATCGAATTGATACAATTGGTATTCAGGAGTTCGTAAAAAAACTGAAACCAAAATGTATCGAAA
TAATTGATTTGTTATTTTTTAAAGGATATACTCAGCAAGAAGCTTCAGAAGAATTGGCACTGCCACTGGGAACTATCAAA
ACTCAAAACAGAAACTGTATTAACGATTTAAGAAATTATCTAAAAATATAA

Upstream 100 bases:

>100_bases
ACTAAAAAAATAGTATTTTTCACAAAAAAATGAATTATCTTTATCTCAGGTTATAAAAATATGTTCGATAAATTTTTGTT
TAAGCTTTAAATCCAAATCT

Downstream 100 bases:

>100_bases
TGGAAGCACAAGAATATATTGAATCAGGAATTCTAGAACTTTATGTTTACGGTTTATTAACCGAAAAGGAGAATCTGGAA
ATAGCCGAACTGGCTAAGAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSQEELLVLIYKKDERAFTHLYDMYSKSLFSVINVLIKNREEAEDVLQEVFVKIWKNIDSYNESKGRFYTWILNIARNTS
IDKLRSKNFNNSQKNLSSDNFVNLLDDSNKLTNRIDTIGIQEFVKKLKPKCIEIIDLLFFKGYTQQEASEELALPLGTIK
TQNRNCINDLRNYLKI

Sequences:

>Translated_176_residues
MSQEELLVLIYKKDERAFTHLYDMYSKSLFSVINVLIKNREEAEDVLQEVFVKIWKNIDSYNESKGRFYTWILNIARNTS
IDKLRSKNFNNSQKNLSSDNFVNLLDDSNKLTNRIDTIGIQEFVKKLKPKCIEIIDLLFFKGYTQQEASEELALPLGTIK
TQNRNCINDLRNYLKI
>Mature_175_residues
SQEELLVLIYKKDERAFTHLYDMYSKSLFSVINVLIKNREEAEDVLQEVFVKIWKNIDSYNESKGRFYTWILNIARNTSI
DKLRSKNFNNSQKNLSSDNFVNLLDDSNKLTNRIDTIGIQEFVKKLKPKCIEIIDLLFFKGYTQQEASEELALPLGTIKT
QNRNCINDLRNYLKI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20727; Mature: 20596

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEELLVLIYKKDERAFTHLYDMYSKSLFSVINVLIKNREEAEDVLQEVFVKIWKNIDS
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
YNESKGRFYTWILNIARNTSIDKLRSKNFNNSQKNLSSDNFVNLLDDSNKLTNRIDTIGI
CCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCCHHHHHCCCHHHHHHHHHHHH
QEFVKKLKPKCIEIIDLLFFKGYTQQEASEELALPLGTIKTQNRNCINDLRNYLKI
HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SQEELLVLIYKKDERAFTHLYDMYSKSLFSVINVLIKNREEAEDVLQEVFVKIWKNIDS
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
YNESKGRFYTWILNIARNTSIDKLRSKNFNNSQKNLSSDNFVNLLDDSNKLTNRIDTIGI
CCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCCHHHHHCCCHHHHHHHHHHHH
QEFVKKLKPKCIEIIDLLFFKGYTQQEASEELALPLGTIKTQNRNCINDLRNYLKI
HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA