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The map label for this gene is csd [H]

Identifier: 146300545

GI number: 146300545

Start: 3328284

End: 3329771

Strand: Direct

Name: csd [H]

Synonym: Fjoh_2795

Alternate gene names: 146300545

Gene position: 3328284-3329771 (Clockwise)

Preceding gene: 146300542

Following gene: 146300552

Centisome position: 54.59

GC content: 35.75

Gene sequence:

>1488_bases
ATGAATACCAAAAATAGTACCATCAGTCTAGAAACTTATTTTCAGGAATTTAGACATCATATCGTTGGCATAGATCAGGA
ATTTATGTCACCTTTTGGCAAAAAAAACATTATTTATACCGATTGGACTGCCAGCGGAAGGCTTTACAGACCAATTGAGG
AGAAACTTTTGAACCAATTTGGACCATTTGTTGCCAATACACATACTGAAACTACCGTGTCAGGTACTGCCATGACAAAG
GCTTACCATCATGCGAGACATATTATTAAACGTCATACTAATGCAAACGAAGATGATGTTTTGATTACAGATGGAACCGG
AATGACTGGAGTTATCAATAAATTCCAACGTATTCTGGGTTTGAAAATCCCTGAAAACCTTAAAAATTTTACGACTGTTC
CAGCAGAAAAAAAACCTATTGTTTTTATTTCGCACATGGAGCATCACTCTAATCAAACCTCTTGGTTAGAGACTATTGCA
GATGTTGAAATTATTCCATCTTGCGAAAAAGGTTTGTTTTGTTTAGATAATTTAGAGTTACTGCTGCAAAAGTACAGCGA
CAGAACTATAAAAATTGCTTCTATAACTTCCTGTTCGAATGTTACGGGAATAAAAACTCCTTTTCATGATGCTGCAAAAT
TAATGCATCAATACAATGGAGTTTGTTTTGTAGATTTTGCCTGCTCTGGTCCTTATGTTGAAATCGATATGCATCCAAAA
GATCCGGAATCTTATTTGGACGCGATTTTCTTTTCACCTCATAAATTTCTCGGTGGTCCTGGAACTTCGGGAGTTTTGAT
ATTCAACAAAAAATTATACAACAATATGATTCCTGATTGTCCGGGAGGAGGAACGGTAAGCTGGACAAATCCATGGGGCG
AACATAAATATATTGACAATATTGAGGATCGCGAAGATGGCGGAACTCCGGGATTTCTTCAGGTTATTAAAACCGCTTTG
GCAATTGAGCTGAAAGAAGAAATGGGAATCGAAAACATTCTGGAGCGTGAGCATGAAATTGTAGATTTTGTTTTCAAAGA
ACTGGAACCTGTTGAGAATATTAAAATTTTAGCAGGACAGCATAAAAAACGTTTAGGCGTAATTTCATTTTTTATTGAGG
ATCTGCATTTTAACTTAGGCGTGAAATTATTAAACGACCGATTTGGAATCCAGACTCGCGGCGGATGCAGCTGTGCAGGA
ACTTATGGTCATTATTTATTGCACGTAGATCAGGAGACTTCTAATAAACTGGTTAACGAAATTACAATTGGTGATTTGAT
CAAAAAACCGGGATGGATTAGAATGTCAATTCATCCAACGACAACTGATGAAGAAATTGCTTTTGTCTGTGAGAGTATTA
AAGATTTAGCTAAAAATCATAAAACCTGGGCTTTAGACTATTCTTACAATAAAAATACAAATGAGTTTGTTCATAAAAAT
GCAGTTTCATTTGAAGATGAATTGGTAGAAAGCTGGTTTAAATCTTAA

Upstream 100 bases:

>100_bases
AAAGATACCAAAAGTTTATTCAATATTTAAAGTTTATAATTGATAAATTCTCAATATTATAAAAAAGCAATATATTTGCA
GTCAAACACAGGCACAACAA

Downstream 100 bases:

>100_bases
CTTTATCATTGCCTATATATAGTAAACCCGACAGATTTTTAAAACCTGTCGGGTTTGTTATTTTATGAGAAAGATGTTTT
CTGCTTAAAAAAATTACATA

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNTKNSTISLETYFQEFRHHIVGIDQEFMSPFGKKNIIYTDWTASGRLYRPIEEKLLNQFGPFVANTHTETTVSGTAMTK
AYHHARHIIKRHTNANEDDVLITDGTGMTGVINKFQRILGLKIPENLKNFTTVPAEKKPIVFISHMEHHSNQTSWLETIA
DVEIIPSCEKGLFCLDNLELLLQKYSDRTIKIASITSCSNVTGIKTPFHDAAKLMHQYNGVCFVDFACSGPYVEIDMHPK
DPESYLDAIFFSPHKFLGGPGTSGVLIFNKKLYNNMIPDCPGGGTVSWTNPWGEHKYIDNIEDREDGGTPGFLQVIKTAL
AIELKEEMGIENILEREHEIVDFVFKELEPVENIKILAGQHKKRLGVISFFIEDLHFNLGVKLLNDRFGIQTRGGCSCAG
TYGHYLLHVDQETSNKLVNEITIGDLIKKPGWIRMSIHPTTTDEEIAFVCESIKDLAKNHKTWALDYSYNKNTNEFVHKN
AVSFEDELVESWFKS

Sequences:

>Translated_495_residues
MNTKNSTISLETYFQEFRHHIVGIDQEFMSPFGKKNIIYTDWTASGRLYRPIEEKLLNQFGPFVANTHTETTVSGTAMTK
AYHHARHIIKRHTNANEDDVLITDGTGMTGVINKFQRILGLKIPENLKNFTTVPAEKKPIVFISHMEHHSNQTSWLETIA
DVEIIPSCEKGLFCLDNLELLLQKYSDRTIKIASITSCSNVTGIKTPFHDAAKLMHQYNGVCFVDFACSGPYVEIDMHPK
DPESYLDAIFFSPHKFLGGPGTSGVLIFNKKLYNNMIPDCPGGGTVSWTNPWGEHKYIDNIEDREDGGTPGFLQVIKTAL
AIELKEEMGIENILEREHEIVDFVFKELEPVENIKILAGQHKKRLGVISFFIEDLHFNLGVKLLNDRFGIQTRGGCSCAG
TYGHYLLHVDQETSNKLVNEITIGDLIKKPGWIRMSIHPTTTDEEIAFVCESIKDLAKNHKTWALDYSYNKNTNEFVHKN
AVSFEDELVESWFKS
>Mature_495_residues
MNTKNSTISLETYFQEFRHHIVGIDQEFMSPFGKKNIIYTDWTASGRLYRPIEEKLLNQFGPFVANTHTETTVSGTAMTK
AYHHARHIIKRHTNANEDDVLITDGTGMTGVINKFQRILGLKIPENLKNFTTVPAEKKPIVFISHMEHHSNQTSWLETIA
DVEIIPSCEKGLFCLDNLELLLQKYSDRTIKIASITSCSNVTGIKTPFHDAAKLMHQYNGVCFVDFACSGPYVEIDMHPK
DPESYLDAIFFSPHKFLGGPGTSGVLIFNKKLYNNMIPDCPGGGTVSWTNPWGEHKYIDNIEDREDGGTPGFLQVIKTAL
AIELKEEMGIENILEREHEIVDFVFKELEPVENIKILAGQHKKRLGVISFFIEDLHFNLGVKLLNDRFGIQTRGGCSCAG
TYGHYLLHVDQETSNKLVNEITIGDLIKKPGWIRMSIHPTTTDEEIAFVCESIKDLAKNHKTWALDYSYNKNTNEFVHKN
AVSFEDELVESWFKS

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=264, Percent_Identity=30.6818181818182, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193211090, Length=494, Percent_Identity=31.1740890688259, Blast_Score=222, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 56135; Mature: 56135

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKNSTISLETYFQEFRHHIVGIDQEFMSPFGKKNIIYTDWTASGRLYRPIEEKLLNQF
CCCCCCEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCEECHHHHHHHHHH
GPFVANTHTETTVSGTAMTKAYHHARHIIKRHTNANEDDVLITDGTGMTGVINKFQRILG
CCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHC
LKIPENLKNFTTVPAEKKPIVFISHMEHHSNQTSWLETIADVEIIPSCEKGLFCLDNLEL
CCCCHHHHHCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHH
LLQKYSDRTIKIASITSCSNVTGIKTPFHDAAKLMHQYNGVCFVDFACSGPYVEIDMHPK
HHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCC
DPESYLDAIFFSPHKFLGGPGTSGVLIFNKKLYNNMIPDCPGGGTVSWTNPWGEHKYIDN
CHHHHHHHHHCCCHHHCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC
IEDREDGGTPGFLQVIKTALAIELKEEMGIENILEREHEIVDFVFKELEPVENIKILAGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
HKKRLGVISFFIEDLHFNLGVKLLNDRFGIQTRGGCSCAGTYGHYLLHVDQETSNKLVNE
CHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHH
ITIGDLIKKPGWIRMSIHPTTTDEEIAFVCESIKDLAKNHKTWALDYSYNKNTNEFVHKN
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHC
AVSFEDELVESWFKS
CCCHHHHHHHHHHCC
>Mature Secondary Structure
MNTKNSTISLETYFQEFRHHIVGIDQEFMSPFGKKNIIYTDWTASGRLYRPIEEKLLNQF
CCCCCCEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCEECHHHHHHHHHH
GPFVANTHTETTVSGTAMTKAYHHARHIIKRHTNANEDDVLITDGTGMTGVINKFQRILG
CCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHC
LKIPENLKNFTTVPAEKKPIVFISHMEHHSNQTSWLETIADVEIIPSCEKGLFCLDNLEL
CCCCHHHHHCCCCCCCCCCEEEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHH
LLQKYSDRTIKIASITSCSNVTGIKTPFHDAAKLMHQYNGVCFVDFACSGPYVEIDMHPK
HHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCC
DPESYLDAIFFSPHKFLGGPGTSGVLIFNKKLYNNMIPDCPGGGTVSWTNPWGEHKYIDN
CHHHHHHHHHCCCHHHCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEECCCCCCCCCCCCC
IEDREDGGTPGFLQVIKTALAIELKEEMGIENILEREHEIVDFVFKELEPVENIKILAGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
HKKRLGVISFFIEDLHFNLGVKLLNDRFGIQTRGGCSCAGTYGHYLLHVDQETSNKLVNE
CHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHH
ITIGDLIKKPGWIRMSIHPTTTDEEIAFVCESIKDLAKNHKTWALDYSYNKNTNEFVHKN
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHC
AVSFEDELVESWFKS
CCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA