| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300483
Identifier: 146300483
GI number: 146300483
Start: 3257664
End: 3258911
Strand: Reverse
Name: 146300483
Synonym: Fjoh_2733
Alternate gene names: NA
Gene position: 3258911-3257664 (Counterclockwise)
Preceding gene: 146300484
Following gene: 146300482
Centisome position: 53.45
GC content: 32.85
Gene sequence:
>1248_bases ATGAGAAAACTATATGCATTATTATTACTTGTACTTTTTAATCAGGTAGTTATGGCTCAAAAAACAGTCACTCTTCAAGA TTGTGAGAGCCAGTTTTTAAAAAACAATCTTTTTTTGCTAGCCTCTCATTATAATATTGATGCCGCAAAAGCCATGACCA TTCAGGCCCGAATATGGGATAATCCAAACCTTACTGCAGAATTAAACGCCTATAATCCTGAAAGGGATAAGTTTTTTGAC ATTGGCAAACAAGGACAAAAAGTATTTGGTATCGAACAGTTAATCTATTTAGGCGGAAAAAAACGTAATGAAGTTAAACT GGCAAAAACTAACGAACAATTAGCAGAACTTCAGTTCAATGATTTATTAAGAACATTAAAACTGCAGCTGCGCCAGAGTT TTTACACGGTTTATTACAACACAAAAAGTCTTGAAATAACTGATAAACAATTGGTTCATATTGAAGATTTAATAAACTCC TACTCTATTCAGGCTCAAAAAGGAAATATTCCTCTGCGAGATGTTGTGCGTTTACAGTCTCTGTATCTAAACTTTAAGAA CGAACGAATGGAAGTCGTTAACAACAGCATTGAAGAGCAGGCAAATTTAAAATTACTGCTAAATTCAACTGAAACTATTA TTCCTGATGTTTCTAAAGACGATTTTAATAAATACTTAAAAATAATTCCTTTTGATCTAAAATCTTTTGAAGATGAAGCA ATTGCCAATCGTCCGGATTATTTAGCCAAACAAAAAGAAATTGAAGCTAATGAACTGAATGTAAAATGGCAAAAATCGCT TTCTGTACCAGATATAACTTTGGGCGCTAATTATGATCAGCGAAGCGGTGCATTTAATAATGAGGCTAATATTTCTGTTG GAATTCCGCTGCCGCTTTGGAACAAAAACAAAGGAAATATCAAAAATGCTCAGGCCGTTTTAGCCCAATCTAAAGTAGAA AAGCAAAACTTTAATCTTCAATTGGAAACCGAAATCACATCGGCATGGAATAAATGGGATGAATCCCGAAAAAACTATGC AGTTATAAAACCAACTGTAAACTCAGACTTTGAAGCGGTTTATAACGGAATCTTAACCAATTTCCAAAAAAGAAATATCA GCTTATTAGAATTTACCGATTTTATGGAAAGTTACAATCAGGCTAATATTCAGGTTAATGAATTGAAGAAAAAATTGGCT TTATCCGGCGAAGAATTAAATACTACTATCAACAAGGATTTATTTTAA
Upstream 100 bases:
>100_bases ATTCTTTCATTAATATTTTATTTTAAGCTAATTTTAAGGTAGATTTTAAGCCCGCTTAAAGTCTGCCGATAGCATATTTG TACAAAATAAAATAGATACA
Downstream 100 bases:
>100_bases AACTAAATAATAATGAAACATACACTAATTATAGGAATTGCAATAGTAAGTTTATCACTTGCCAGCTGCAAAAAGGAAGT AGAAAATCCTCAAACCAATA
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Cation Efflux System Protein CzcC; Chemiosmotic Efflux System C Protein C; Outer Membrane Protein; Cation Efflux-Related Outer Membrane Exported Protein; LC Outer Membrane Protein; Outer Membrane Cobalt-Zinc-Cadmium Resistance Protein CzcC; Heavy Metal Efflux Pump; Cation Efflux System Protein; Chemiosmotic Efflux System Protein C; LC-Related Efflux Protein; Outer Membrane Protein lC
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MRKLYALLLLVLFNQVVMAQKTVTLQDCESQFLKNNLFLLASHYNIDAAKAMTIQARIWDNPNLTAELNAYNPERDKFFD IGKQGQKVFGIEQLIYLGGKKRNEVKLAKTNEQLAELQFNDLLRTLKLQLRQSFYTVYYNTKSLEITDKQLVHIEDLINS YSIQAQKGNIPLRDVVRLQSLYLNFKNERMEVVNNSIEEQANLKLLLNSTETIIPDVSKDDFNKYLKIIPFDLKSFEDEA IANRPDYLAKQKEIEANELNVKWQKSLSVPDITLGANYDQRSGAFNNEANISVGIPLPLWNKNKGNIKNAQAVLAQSKVE KQNFNLQLETEITSAWNKWDESRKNYAVIKPTVNSDFEAVYNGILTNFQKRNISLLEFTDFMESYNQANIQVNELKKKLA LSGEELNTTINKDLF
Sequences:
>Translated_415_residues MRKLYALLLLVLFNQVVMAQKTVTLQDCESQFLKNNLFLLASHYNIDAAKAMTIQARIWDNPNLTAELNAYNPERDKFFD IGKQGQKVFGIEQLIYLGGKKRNEVKLAKTNEQLAELQFNDLLRTLKLQLRQSFYTVYYNTKSLEITDKQLVHIEDLINS YSIQAQKGNIPLRDVVRLQSLYLNFKNERMEVVNNSIEEQANLKLLLNSTETIIPDVSKDDFNKYLKIIPFDLKSFEDEA IANRPDYLAKQKEIEANELNVKWQKSLSVPDITLGANYDQRSGAFNNEANISVGIPLPLWNKNKGNIKNAQAVLAQSKVE KQNFNLQLETEITSAWNKWDESRKNYAVIKPTVNSDFEAVYNGILTNFQKRNISLLEFTDFMESYNQANIQVNELKKKLA LSGEELNTTINKDLF >Mature_415_residues MRKLYALLLLVLFNQVVMAQKTVTLQDCESQFLKNNLFLLASHYNIDAAKAMTIQARIWDNPNLTAELNAYNPERDKFFD IGKQGQKVFGIEQLIYLGGKKRNEVKLAKTNEQLAELQFNDLLRTLKLQLRQSFYTVYYNTKSLEITDKQLVHIEDLINS YSIQAQKGNIPLRDVVRLQSLYLNFKNERMEVVNNSIEEQANLKLLLNSTETIIPDVSKDDFNKYLKIIPFDLKSFEDEA IANRPDYLAKQKEIEANELNVKWQKSLSVPDITLGANYDQRSGAFNNEANISVGIPLPLWNKNKGNIKNAQAVLAQSKVE KQNFNLQLETEITSAWNKWDESRKNYAVIKPTVNSDFEAVYNGILTNFQKRNISLLEFTDFMESYNQANIQVNELKKKLA LSGEELNTTINKDLF
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47842; Mature: 47842
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLYALLLLVLFNQVVMAQKTVTLQDCESQFLKNNLFLLASHYNIDAAKAMTIQARIWD CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEC NPNLTAELNAYNPERDKFFDIGKQGQKVFGIEQLIYLGGKKRNEVKLAKTNEQLAELQFN CCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHH DLLRTLKLQLRQSFYTVYYNTKSLEITDKQLVHIEDLINSYSIQAQKGNIPLRDVVRLQS HHHHHHHHHHHHCEEEEEEECCEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH LYLNFKNERMEVVNNSIEEQANLKLLLNSTETIIPDVSKDDFNKYLKIIPFDLKSFEDEA HHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCCHHHHHHHHEEEECCHHCCCCHH IANRPDYLAKQKEIEANELNVKWQKSLSVPDITLGANYDQRSGAFNNEANISVGIPLPLW HCCCCHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCC NKNKGNIKNAQAVLAQSKVEKQNFNLQLETEITSAWNKWDESRKNYAVIKPTVNSDFEAV CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHH YNGILTNFQKRNISLLEFTDFMESYNQANIQVNELKKKLALSGEELNTTINKDLF HHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHCCCCCCCCC >Mature Secondary Structure MRKLYALLLLVLFNQVVMAQKTVTLQDCESQFLKNNLFLLASHYNIDAAKAMTIQARIWD CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEC NPNLTAELNAYNPERDKFFDIGKQGQKVFGIEQLIYLGGKKRNEVKLAKTNEQLAELQFN CCCCEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHH DLLRTLKLQLRQSFYTVYYNTKSLEITDKQLVHIEDLINSYSIQAQKGNIPLRDVVRLQS HHHHHHHHHHHHCEEEEEEECCEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH LYLNFKNERMEVVNNSIEEQANLKLLLNSTETIIPDVSKDDFNKYLKIIPFDLKSFEDEA HHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHCCCCCCHHHHHHHHEEEECCHHCCCCHH IANRPDYLAKQKEIEANELNVKWQKSLSVPDITLGANYDQRSGAFNNEANISVGIPLPLW HCCCCHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCC NKNKGNIKNAQAVLAQSKVEKQNFNLQLETEITSAWNKWDESRKNYAVIKPTVNSDFEAV CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHH YNGILTNFQKRNISLLEFTDFMESYNQANIQVNELKKKLALSGEELNTTINKDLF HHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA