| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300471
Identifier: 146300471
GI number: 146300471
Start: 3243373
End: 3245058
Strand: Reverse
Name: 146300471
Synonym: Fjoh_2721
Alternate gene names: NA
Gene position: 3245058-3243373 (Counterclockwise)
Preceding gene: 146300472
Following gene: 146300470
Centisome position: 53.22
GC content: 32.74
Gene sequence:
>1686_bases ATGAAAGCATCTAATAAATTAAATCTTAAAACATTAGGCATTACAATTTTTATTTTAATTGTTTTAAATGTTCTTGGAAG CTTATTTTTTCATCGTTTTGATTTGACCAAAGACAAACGATATACTTTATCTGAAACATCTTTAAAAATTGTAAAACAGG TTAAAAACCCGTTGTCAATTAAAATTTATATGCAGGGAGAACTTCCTGCAGATTTTAGACGTTTACAACAGGAAACCAAA CAATTATTAGAAGAATTTCAGGCTTACAATAATAATATTGTTTTTGAATTCGTAAACCCAATGGAAAACGAAAACGAAAG CATGGAAATGGTAAAATCACTTTACCAAAAAGGTCTTACTCCTGTAAATATAACAGTTGACGATAAAGGAAAACAATCGC AGGCAATGGTTTTTCCGTGGGCAATTGCGGTTTATAACAACAAAGAAGTTAATATTCCCTTGCTGAAAAACATTATGGGA GCTTCTACTACTCAAAAAGTGATAGGATCTATTCAGCATTTAGAATATTCAATTGCTGATGCGATCAATAAAATTACGAA AGACAGACAAAAGAAAGTTGCTATTATAAAAGGAAATGGCGAATTGTCTGAAATTCATATAGGTAAATTATTAAGACAAA TCAAAGAGAGTTATTACATTGGCCCTTTTACACTGGATTCTGTTGCGAAAGATCCAAACGGAACTTTAGATGCTCTTAAA AAATATGATTTAGCAATTATCTCTAAGCCAACAGAAACTTTCTCAGATGAAGAAAAACAAGTTCTGGATCAATTTATCAT GAACGGCGGAAAAACATTATGGCTGATAGATCAGGTTGATGCAGATATGGACAGCTTATATAATGATGCCGGAGCAACAC TTGCTTATCCAAGAGATTTGAATTTAAATGATATGTTCTTCAAATACGGTTTCAGAATTAATCCTGATTTGGTTAAAGAC GAAAACGGAAGTCCAATAAAACTGGCAACCGGAGAACAAGGAAGTGCAACACAATATCAGGATTTTATCTGGAAATTTGC ACCTCAGGTTTATCCAACAAGCCAGCATCCTATCGTAAAAAATCTGGGTGGCATTAAATTCGATTTTGCAAGTCCAATTG ATACTTTGAAAAACGGAATTAAAAAGACGGTTTTATTACAATCGTCTCAATATTCAAAACAAATTGGAACACCTTCAGAA ATCAATCTGAACATGGTAACCGAAGAAACGTCTCCTAAGGATTATCTGAACAAAGGAAATCTAGTCCTTTCAGTTTTATT AGAAGGAAGTTTTAATTCGGTTTTTGAAAATCGTGTACTGCCTTTTAAAGAAAGTTCGTTTCAGGCAAAAGGAAAACCAA CTAAGATGATTGTCGTTGCCGATGGAGATATAGCCAGAAACCAATTAGACAAAAACATGATGCCTGTTGAGCTTGGTTAC GATCAAAGAACAGGGAATCTTTATGATAATAAAGATTTTATGATGAACTGTGTAAATTATCTTCTTGACGATACAGGACT TATTAACATTAGAAGCAAAGATGTCGAACTGCCGTTATTGGATAAAGAAAAAGTTTACGAAAATTACACCACAACGCAAT TCATAACTATCGGGCTTCCAATCCTTATTTTATTGGTTTTCGGATTAGTATTTACCTTTATCAGAAAAAGAAAGTACAGT AAATAG
Upstream 100 bases:
>100_bases GCCGAGGCGTTATTGATACCCGCGATGTAATTTACTTTTTAAGTATCAGCGTTTTGTTTTTATCTTTTACCGTTTATCAA TTAAAATCTTTTAAAGCGTA
Downstream 100 bases:
>100_bases ATGTTAATAAAAAAATTGCGAAACTAAGAATGTTTACGATATATTTGTAAAACCTTACTTAGTTACAGAAAAACTGAGAA AAAGAGCAAAAAATAAAACA
Product: gliding motility ABC transporter auxiliary component-like protein
Products: NA
Alternate protein names: Gliding Motility Protein ABC-Related Protein; Abc Transporter Inner Membrane Protein; Protein Involved In Gliding Motility Gldg; ABC Transporter Protein
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MKASNKLNLKTLGITIFILIVLNVLGSLFFHRFDLTKDKRYTLSETSLKIVKQVKNPLSIKIYMQGELPADFRRLQQETK QLLEEFQAYNNNIVFEFVNPMENENESMEMVKSLYQKGLTPVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNIMG ASTTQKVIGSIQHLEYSIADAINKITKDRQKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPNGTLDALK KYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYNDAGATLAYPRDLNLNDMFFKYGFRINPDLVKD ENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVKNLGGIKFDFASPIDTLKNGIKKTVLLQSSQYSKQIGTPSE INLNMVTEETSPKDYLNKGNLVLSVLLEGSFNSVFENRVLPFKESSFQAKGKPTKMIVVADGDIARNQLDKNMMPVELGY DQRTGNLYDNKDFMMNCVNYLLDDTGLINIRSKDVELPLLDKEKVYENYTTTQFITIGLPILILLVFGLVFTFIRKRKYS K
Sequences:
>Translated_561_residues MKASNKLNLKTLGITIFILIVLNVLGSLFFHRFDLTKDKRYTLSETSLKIVKQVKNPLSIKIYMQGELPADFRRLQQETK QLLEEFQAYNNNIVFEFVNPMENENESMEMVKSLYQKGLTPVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNIMG ASTTQKVIGSIQHLEYSIADAINKITKDRQKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPNGTLDALK KYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYNDAGATLAYPRDLNLNDMFFKYGFRINPDLVKD ENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVKNLGGIKFDFASPIDTLKNGIKKTVLLQSSQYSKQIGTPSE INLNMVTEETSPKDYLNKGNLVLSVLLEGSFNSVFENRVLPFKESSFQAKGKPTKMIVVADGDIARNQLDKNMMPVELGY DQRTGNLYDNKDFMMNCVNYLLDDTGLINIRSKDVELPLLDKEKVYENYTTTQFITIGLPILILLVFGLVFTFIRKRKYS K >Mature_561_residues MKASNKLNLKTLGITIFILIVLNVLGSLFFHRFDLTKDKRYTLSETSLKIVKQVKNPLSIKIYMQGELPADFRRLQQETK QLLEEFQAYNNNIVFEFVNPMENENESMEMVKSLYQKGLTPVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNIMG ASTTQKVIGSIQHLEYSIADAINKITKDRQKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPNGTLDALK KYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYNDAGATLAYPRDLNLNDMFFKYGFRINPDLVKD ENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVKNLGGIKFDFASPIDTLKNGIKKTVLLQSSQYSKQIGTPSE INLNMVTEETSPKDYLNKGNLVLSVLLEGSFNSVFENRVLPFKESSFQAKGKPTKMIVVADGDIARNQLDKNMMPVELGY DQRTGNLYDNKDFMMNCVNYLLDDTGLINIRSKDVELPLLDKEKVYENYTTTQFITIGLPILILLVFGLVFTFIRKRKYS K
Specific function: Unknown
COG id: COG3225
COG function: function code N; ABC-type uncharacterized transport system involved in gliding motility, auxiliary component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63656; Mature: 63656
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKASNKLNLKTLGITIFILIVLNVLGSLFFHRFDLTKDKRYTLSETSLKIVKQVKNPLSI CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCEE KIYMQGELPADFRRLQQETKQLLEEFQAYNNNIVFEFVNPMENENESMEMVKSLYQKGLT EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCC PVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNIMGASTTQKVIGSIQHLEYSIAD EEEEEECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH AINKITKDRQKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPNGTLDALK HHHHHHHHHCCEEEEEECCCCEEHHHHHHHHHHHHHCEECCCEEHHHHCCCCCCHHHHHH KYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYNDAGATLAYPRDL HCCEEEEECCCHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCC NLNDMFFKYGFRINPDLVKDENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVK CCCHHHHCCCCEECCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH NLGGIKFDFASPIDTLKNGIKKTVLLQSSQYSKQIGTPSEINLNMVTEETSPKDYLNKGN HCCCCEEECCCHHHHHHHHHHHEEEEECCHHHHHCCCCCCEEEEEEECCCCCHHHHCCCC LVLSVLLEGSFNSVFENRVLPFKESSFQAKGKPTKMIVVADGDIARNQLDKNMMPVELGY EEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCEEECC DQRTGNLYDNKDFMMNCVNYLLDDTGLINIRSKDVELPLLDKEKVYENYTTTQFITIGLP CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEHHHH ILILLVFGLVFTFIRKRKYSK HHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKASNKLNLKTLGITIFILIVLNVLGSLFFHRFDLTKDKRYTLSETSLKIVKQVKNPLSI CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCEE KIYMQGELPADFRRLQQETKQLLEEFQAYNNNIVFEFVNPMENENESMEMVKSLYQKGLT EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCC PVNITVDDKGKQSQAMVFPWAIAVYNNKEVNIPLLKNIMGASTTQKVIGSIQHLEYSIAD EEEEEECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH AINKITKDRQKKVAIIKGNGELSEIHIGKLLRQIKESYYIGPFTLDSVAKDPNGTLDALK HHHHHHHHHCCEEEEEECCCCEEHHHHHHHHHHHHHCEECCCEEHHHHCCCCCCHHHHHH KYDLAIISKPTETFSDEEKQVLDQFIMNGGKTLWLIDQVDADMDSLYNDAGATLAYPRDL HCCEEEEECCCHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCEEECCCCC NLNDMFFKYGFRINPDLVKDENGSPIKLATGEQGSATQYQDFIWKFAPQVYPTSQHPIVK CCCHHHHCCCCEECCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH NLGGIKFDFASPIDTLKNGIKKTVLLQSSQYSKQIGTPSEINLNMVTEETSPKDYLNKGN HCCCCEEECCCHHHHHHHHHHHEEEEECCHHHHHCCCCCCEEEEEEECCCCCHHHHCCCC LVLSVLLEGSFNSVFENRVLPFKESSFQAKGKPTKMIVVADGDIARNQLDKNMMPVELGY EEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCEEECC DQRTGNLYDNKDFMMNCVNYLLDDTGLINIRSKDVELPLLDKEKVYENYTTTQFITIGLP CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEEHHHH ILILLVFGLVFTFIRKRKYSK HHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA