| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is rhsB [C]
Identifier: 146300429
GI number: 146300429
Start: 3188354
End: 3189046
Strand: Direct
Name: rhsB [C]
Synonym: Fjoh_2678
Alternate gene names: 146300429
Gene position: 3188354-3189046 (Clockwise)
Preceding gene: 146300428
Following gene: 146300430
Centisome position: 52.29
GC content: 35.93
Gene sequence:
>693_bases TTGAACTGGGACAGCTTCAAGTGGAGAAATTATGATTATGCAATTGGAAGATTTATGTCTATTGACCCGTTAGCGGAGAA GTATAGTTTCCAGTCGCCATATAATTTTTCTGAAAACAGAGTTATTGATTCGAGAGAATTAGAAGGATTGGAAGCGTATA GGTTATTTAGGACTGAAAAGGAGGCGGCTAATAATTGGGGACAGCAATATGCTGGTAAATCGATTCGTGAAAATAAAGAA TTTGGTTCAACGATTGGAAAGAGTACTGATGCTAAAGGCAATGTTAGATATTCCTATGCACCACCAGCTCTTGGCGACAA TGATGGTGTTACAATTAGTGATGCACCACAAGGAACAACACCAACTGCTGATATACACGCTCACGGAGCATATGATTCAG AATACTTTAATAATGATTTTTCTCGTGGAGACAAAAAAGGCAATGATAATACAGGTCTAAATGGCTACTTAACGACTCCA AGTGGAACTCTTCAAAAATATAATCCTAAAACTAAGGAAATAACAATTGTAAATGAGACACAAGCAAGTGACCCAAAAGA CCCTGATAAAAAAAATAACATTTCCCCAAATGAAAAGAAGGCTGAAAAGTCAACTACGGATAGTAAACAAAAAACAAATA CTAATATTTGGCCAGTAATTAAGCCTTTAATTCCAACAATTCCAGCTAAATAA
Upstream 100 bases:
>100_bases CTAGGAAATAGAGAAACGGACGTTCTTACAACACAATAGAAGTTTTGTAAATCCTTATAAGTATAAGTTCCAAGAGCAGG AGCGTCAGGACGAGCTGGGA
Downstream 100 bases:
>100_bases ACTTAAATTTTAAAAATATGAAAAAGCATAATGTATTATTAGTGGTTTTTTTATTAATATTCTTTAATTCGTGCTCCCAA GAGAAAACCAAGTCGCAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MNWDSFKWRNYDYAIGRFMSIDPLAEKYSFQSPYNFSENRVIDSRELEGLEAYRLFRTEKEAANNWGQQYAGKSIRENKE FGSTIGKSTDAKGNVRYSYAPPALGDNDGVTISDAPQGTTPTADIHAHGAYDSEYFNNDFSRGDKKGNDNTGLNGYLTTP SGTLQKYNPKTKEITIVNETQASDPKDPDKKNNISPNEKKAEKSTTDSKQKTNTNIWPVIKPLIPTIPAK
Sequences:
>Translated_230_residues MNWDSFKWRNYDYAIGRFMSIDPLAEKYSFQSPYNFSENRVIDSRELEGLEAYRLFRTEKEAANNWGQQYAGKSIRENKE FGSTIGKSTDAKGNVRYSYAPPALGDNDGVTISDAPQGTTPTADIHAHGAYDSEYFNNDFSRGDKKGNDNTGLNGYLTTP SGTLQKYNPKTKEITIVNETQASDPKDPDKKNNISPNEKKAEKSTTDSKQKTNTNIWPVIKPLIPTIPAK >Mature_230_residues MNWDSFKWRNYDYAIGRFMSIDPLAEKYSFQSPYNFSENRVIDSRELEGLEAYRLFRTEKEAANNWGQQYAGKSIRENKE FGSTIGKSTDAKGNVRYSYAPPALGDNDGVTISDAPQGTTPTADIHAHGAYDSEYFNNDFSRGDKKGNDNTGLNGYLTTP SGTLQKYNPKTKEITIVNETQASDPKDPDKKNNISPNEKKAEKSTTDSKQKTNTNIWPVIKPLIPTIPAK
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25811; Mature: 25811
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWDSFKWRNYDYAIGRFMSIDPLAEKYSFQSPYNFSENRVIDSRELEGLEAYRLFRTEK CCCCCCCCCCCCHHHHCEEECCHHHHHHCCCCCCCCCCCCEECCHHHCCHHHHHHHHHHH EAANNWGQQYAGKSIRENKEFGSTIGKSTDAKGNVRYSYAPPALGDNDGVTISDAPQGTT HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCC PTADIHAHGAYDSEYFNNDFSRGDKKGNDNTGLNGYLTTPSGTLQKYNPKTKEITIVNET CCCEEEECCCCCHHHHCCCHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECC QASDPKDPDKKNNISPNEKKAEKSTTDSKQKTNTNIWPVIKPLIPTIPAK CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure MNWDSFKWRNYDYAIGRFMSIDPLAEKYSFQSPYNFSENRVIDSRELEGLEAYRLFRTEK CCCCCCCCCCCCHHHHCEEECCHHHHHHCCCCCCCCCCCCEECCHHHCCHHHHHHHHHHH EAANNWGQQYAGKSIRENKEFGSTIGKSTDAKGNVRYSYAPPALGDNDGVTISDAPQGTT HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCC PTADIHAHGAYDSEYFNNDFSRGDKKGNDNTGLNGYLTTPSGTLQKYNPKTKEITIVNET CCCEEEECCCCCHHHHCCCHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECC QASDPKDPDKKNNISPNEKKAEKSTTDSKQKTNTNIWPVIKPLIPTIPAK CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA