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The map label for this gene is xerC [H]

Identifier: 146300388

GI number: 146300388

Start: 3131194

End: 3132453

Strand: Direct

Name: xerC [H]

Synonym: Fjoh_2633

Alternate gene names: 146300388

Gene position: 3131194-3132453 (Clockwise)

Preceding gene: 146300387

Following gene: 146300389

Centisome position: 51.36

GC content: 45.24

Gene sequence:

>1260_bases
ATGAAACAATTAGCAAAAACCAAGGTGACTGTGCGCCTGCGAAAAGCAGAAGACCGAGAGGAATGGTATGTCTACATAGA
AAGCTATCCTGTTGAGGTTTCCGGAAGGAAAACGCCACAGAGAATCCGTGAATACTTAAACAGAACCGTAAAAACCGTGG
AGTGGGACAAGCAGAGAACCGCCCGTACAGATTCCCAGGGCATAAAATCCTATAAGCCCAGACGCAGCGATAACGGAATA
ATAATCACCAGAAGCGAAACCGACCGTGAAATTATGCTCTATGCCGACGGAGTGCGTAAAATCAGGCAGAAAGAATACGA
TAATACAGATCTGTACAGTGATGCCGAGAACCTATTGGCTGAACAGAAAGAAAAAGCAAAAGAGGATTTTATCAGATACA
TTGCCTCTGTGGCAGCAAAAAGGCATGCCCGAAGCTCAAAATCCATTATGATCAATTGGGAGCGGACCATAGAGTTTTTA
AAAAGCTATTCCAAAGGCAGGCTGGTGTTTTCCCAGATTGACAGCAGAATGGCGGAAGATTTTAAGCTGTTTCTGCTGGC
TGCGCCGCTCGGAGGAGGCAAAAAAGGGATACTTTCCCGCAACACTGCAGCAAGGTATTTTTCCATATTTAAAGCTGCTT
TAAAACAGGCCTTTATCGACGGATATCTAACCGTTGATTTGTCTTCAAAAATAAAAGGCATACCTGAGCAGGAATCAAGA
CGCGAATATCTTACCATTAAAGAATTGAACGTGCTGGCTGAAATGCCCTGCGAAAAAGATGTCCTTAAAAGAGCCGCGCT
TTTCTCAGCGCTTACCGGCCTGCGGCATTCCGACATCCAGAAGCTCCGCTGGAAAGAGATAAGCCTTGAAGACGACATGG
CCAAACTGCATTTCACCCAGAAAAAAACAAGGGGTGTCGAGTATATGCCTATTTCTGAGCAGGCTTTGCAGCTCTGCGGA
GAGCCAAGACTTCCCGGGCAGCTTGTTTTTGAGGATCTGCCGGACCCGTCGTGGATTTCACGTCCTCTGAAAAAATGGGT
TGAATCTGCCGGCATAAAAAAAAACATTACCTTCCACTGCTTCCGACATACATTTGCAACACTGCAGCTCTCAAGCGGGA
CAGACATCTATACGGTCAGCAAAATGCTGGGGCATACCAACGTAAAAACTACTCAAATCTACGCCAAAGTAATAGATGAG
AAGAAAAACAGAGCTTCGCAGGCAATACAATTGGAATCTTTAAAGAAAAGAGCGCAATGA

Upstream 100 bases:

>100_bases
GCCATATCAGGAAATATTCAATACCTACCAGGCAGATCGGAAAGCATGTATATGCTCCAAAAAGCGAAATTGATAACTTG
TATAACGGAAATGATTTTAT

Downstream 100 bases:

>100_bases
AAATAAAGTACTTCGAATATATTGCAGTTTACCTGTCTGTTTTTTTAGTCTGTGTCTTTGTCGGTGCAATCGGAAGACTG
GTGCTTCTGGAAAAAGGTGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKQLAKTKVTVRLRKAEDREEWYVYIESYPVEVSGRKTPQRIREYLNRTVKTVEWDKQRTARTDSQGIKSYKPRRSDNGI
IITRSETDREIMLYADGVRKIRQKEYDNTDLYSDAENLLAEQKEKAKEDFIRYIASVAAKRHARSSKSIMINWERTIEFL
KSYSKGRLVFSQIDSRMAEDFKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESR
REYLTIKELNVLAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPISEQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDE
KKNRASQAIQLESLKKRAQ

Sequences:

>Translated_419_residues
MKQLAKTKVTVRLRKAEDREEWYVYIESYPVEVSGRKTPQRIREYLNRTVKTVEWDKQRTARTDSQGIKSYKPRRSDNGI
IITRSETDREIMLYADGVRKIRQKEYDNTDLYSDAENLLAEQKEKAKEDFIRYIASVAAKRHARSSKSIMINWERTIEFL
KSYSKGRLVFSQIDSRMAEDFKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESR
REYLTIKELNVLAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPISEQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDE
KKNRASQAIQLESLKKRAQ
>Mature_419_residues
MKQLAKTKVTVRLRKAEDREEWYVYIESYPVEVSGRKTPQRIREYLNRTVKTVEWDKQRTARTDSQGIKSYKPRRSDNGI
IITRSETDREIMLYADGVRKIRQKEYDNTDLYSDAENLLAEQKEKAKEDFIRYIASVAAKRHARSSKSIMINWERTIEFL
KSYSKGRLVFSQIDSRMAEDFKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESR
REYLTIKELNVLAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPISEQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDE
KKNRASQAIQLESLKKRAQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48466; Mature: 48466

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLAKTKVTVRLRKAEDREEWYVYIESYPVEVSGRKTPQRIREYLNRTVKTVEWDKQRT
CCCHHHHHEEEEEECCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
ARTDSQGIKSYKPRRSDNGIIITRSETDREIMLYADGVRKIRQKEYDNTDLYSDAENLLA
CCCCHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHH
EQKEKAKEDFIRYIASVAAKRHARSSKSIMINWERTIEFLKSYSKGRLVFSQIDSRMAED
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
FKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESR
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHCCCCCCHHH
REYLTIKELNVLAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQ
HHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KKTRGVEYMPISEQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHC
HHHCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHE
FRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRASQAIQLESLKKRAQ
EHHHHEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQLAKTKVTVRLRKAEDREEWYVYIESYPVEVSGRKTPQRIREYLNRTVKTVEWDKQRT
CCCHHHHHEEEEEECCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
ARTDSQGIKSYKPRRSDNGIIITRSETDREIMLYADGVRKIRQKEYDNTDLYSDAENLLA
CCCCHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHH
EQKEKAKEDFIRYIASVAAKRHARSSKSIMINWERTIEFLKSYSKGRLVFSQIDSRMAED
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
FKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESR
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHCCCCCCHHH
REYLTIKELNVLAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQ
HHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KKTRGVEYMPISEQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHC
HHHCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHE
FRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRASQAIQLESLKKRAQ
EHHHHEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA