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The map label for this gene is yibD [C]

Identifier: 146300274

GI number: 146300274

Start: 3003870

End: 3004643

Strand: Reverse

Name: yibD [C]

Synonym: Fjoh_2519

Alternate gene names: 146300274

Gene position: 3004643-3003870 (Counterclockwise)

Preceding gene: 146300275

Following gene: 146300272

Centisome position: 49.28

GC content: 28.81

Gene sequence:

>774_bases
ATGAATACTACTGAAAAACAAAAGCTGTCGGTTTTAATTATTACTTTTAATGAAGAGCGATACATAAAATCCCTGCTCGA
AGATGTTGATTTTGCTGATGAAATCATCGTTGTTGATTCTTACAGTACCGATTCTACAATTAAAATAGTGCAATCTTTTC
CAAATGTTACTTTAATTGAAAAGAAATTTGTTGACTATACTTCTCAAAGAAATTTTGCAATAGATCAGGCAAAAAACGAT
TGGATATTATTTATTGATGCCGATGAACGTTTAACTCCAGAACTGAAAACTGAAATTATTTCGACAATACACAATAAAGA
TGCTGTAAGTGCTTATCTGGTTTACAGAATTTTTATGTTTAAAAACAGTAAATTACGTTTTAGCGGCTGGCAGACTGATA
AGATTTTCAGGCTTTTTAATAAAACTTACTGCAGGTACACCGAAGACAGAATGGTACATGAAAAGCTTATCGTAAACGGA
AAAATAGGTATCTTAAAAAATAAAATCATTCACTTTTCTTATACTTCATATCAGGAATATAAACTGAAAATGTATAAGTA
TGGTATTTTAAAGGCGAATGAAAAAGTAAAAAAAGGACAAAAACCAGTTCGAATATTACTGATTTTTCATCCTCTTTATA
CATTTTTATATCAATATTTAATAAGACTTGGTTTTTTAGACGGCATAAATGGAATTATAATATGCTACCTAAATGCTTAC
AGCATTTATATTCGTTACAAAGAATTTTTCCGTCTTACTTCTTCCAAAATTTAA

Upstream 100 bases:

>100_bases
TACTTTTGAATATTATGCTGAGTATCCTCTGTCTTTAATATTGGAAAAATTAGAAGCTTATTTTCGAGAGTACAAAAATT
GAGAAAAGTATAAGCATCGG

Downstream 100 bases:

>100_bases
GCTTCTTTTTTAGGCGTTTCTTTCTATAAAACTGCTCCTGAAAATCGGCTGTATATTTCCACAAAGTTTCAAAAATCTTT
TCCTCAGATTCTTTTTTATA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNTTEKQKLSVLIITFNEERYIKSLLEDVDFADEIIVVDSYSTDSTIKIVQSFPNVTLIEKKFVDYTSQRNFAIDQAKND
WILFIDADERLTPELKTEIISTIHNKDAVSAYLVYRIFMFKNSKLRFSGWQTDKIFRLFNKTYCRYTEDRMVHEKLIVNG
KIGILKNKIIHFSYTSYQEYKLKMYKYGILKANEKVKKGQKPVRILLIFHPLYTFLYQYLIRLGFLDGINGIIICYLNAY
SIYIRYKEFFRLTSSKI

Sequences:

>Translated_257_residues
MNTTEKQKLSVLIITFNEERYIKSLLEDVDFADEIIVVDSYSTDSTIKIVQSFPNVTLIEKKFVDYTSQRNFAIDQAKND
WILFIDADERLTPELKTEIISTIHNKDAVSAYLVYRIFMFKNSKLRFSGWQTDKIFRLFNKTYCRYTEDRMVHEKLIVNG
KIGILKNKIIHFSYTSYQEYKLKMYKYGILKANEKVKKGQKPVRILLIFHPLYTFLYQYLIRLGFLDGINGIIICYLNAY
SIYIRYKEFFRLTSSKI
>Mature_257_residues
MNTTEKQKLSVLIITFNEERYIKSLLEDVDFADEIIVVDSYSTDSTIKIVQSFPNVTLIEKKFVDYTSQRNFAIDQAKND
WILFIDADERLTPELKTEIISTIHNKDAVSAYLVYRIFMFKNSKLRFSGWQTDKIFRLFNKTYCRYTEDRMVHEKLIVNG
KIGILKNKIIHFSYTSYQEYKLKMYKYGILKANEKVKKGQKPVRILLIFHPLYTFLYQYLIRLGFLDGINGIIICYLNAY
SIYIRYKEFFRLTSSKI

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 30585; Mature: 30585

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTEKQKLSVLIITFNEERYIKSLLEDVDFADEIIVVDSYSTDSTIKIVQSFPNVTLIE
CCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEH
KKFVDYTSQRNFAIDQAKNDWILFIDADERLTPELKTEIISTIHNKDAVSAYLVYRIFMF
HHHHHHCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEE
KNSKLRFSGWQTDKIFRLFNKTYCRYTEDRMVHEKLIVNGKIGILKNKIIHFSYTSYQEY
ECCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHEECCCEEEEECEEEEEEECCHHHH
KLKMYKYGILKANEKVKKGQKPVRILLIFHPLYTFLYQYLIRLGFLDGINGIIICYLNAY
EEEEEEEEEEECCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
SIYIRYKEFFRLTSSKI
EEEEEHHHHHHHHCCCC
>Mature Secondary Structure
MNTTEKQKLSVLIITFNEERYIKSLLEDVDFADEIIVVDSYSTDSTIKIVQSFPNVTLIE
CCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEH
KKFVDYTSQRNFAIDQAKNDWILFIDADERLTPELKTEIISTIHNKDAVSAYLVYRIFMF
HHHHHHCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEE
KNSKLRFSGWQTDKIFRLFNKTYCRYTEDRMVHEKLIVNGKIGILKNKIIHFSYTSYQEY
ECCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHEECCCEEEEECEEEEEEECCHHHH
KLKMYKYGILKANEKVKKGQKPVRILLIFHPLYTFLYQYLIRLGFLDGINGIIICYLNAY
EEEEEEEEEEECCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
SIYIRYKEFFRLTSSKI
EEEEEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]