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The map label for this gene is rfaQ [H]

Identifier: 146300275

GI number: 146300275

Start: 3004662

End: 3005726

Strand: Reverse

Name: rfaQ [H]

Synonym: Fjoh_2520

Alternate gene names: 146300275

Gene position: 3005726-3004662 (Counterclockwise)

Preceding gene: 146300279

Following gene: 146300274

Centisome position: 49.3

GC content: 29.86

Gene sequence:

>1065_bases
ATGAGGATATTAGTTATTCAACAAAAAAGGATTGGAGACGTACTAACGAGTACAATAATTTGTAACAACTTAAAGGCTAA
GTTTCCAGATTCGGTAATCGACTATATGTGTTATCCAAATTCTATAGATGTACTAAAAGAAAATCCAAACATCGACAACA
TTATTCCGTTGTCAAACGAAGTTAGAAAATCTATTCCTTCTCTTTTTAAATTCATTTTTCAAATTCGCAGAAAAAAATAT
GATGCGGTAATTGATGTGTATTCAAAATTAGAAACTAACCTGATTACCTTATTTTCTGGAGCAAAATATAAAGTTTCGTA
CCATAAATGGTATACTAAAATATTCTACAATTATACATACGAACGTTTTGATGCCGTAGAATCTGAGCACGGTTTAGCAA
TTGAAAACCGATTATTACTTTTAAAACCTTTTATTTCAGAAAAAATTACAAATGTTAAACCTAAAATATTTTTAAAAGAC
TCTGAGATTAACGAAGCTAAACAACTTTTAAAAAGTTACAACATAGACAGCGAAAAACCGCTTATTATGTTTGGTATTTT
AGGAAGCGAAGTTTATAAAACCTATCCTCTTGAAGGAATGGCAAAAATTATAGATTTTACAGTAGCAAAAACTAATGCAA
CCATAATTTTTAATTACGTTCCATACCAAAAAGATTTGGCATTAGAAGTATATAACTATTGCAGTGAAGAGACAAAAAAA
CATATTGTTTTCGATTTGTACTGTACAGAACTTCGTCCGTTTTTAGCCTTACTTTCACAATGCGAAATGTTAATTGGAAA
CGAAGGCGGTGCCGTTAATATGGCCAAAGCGCTTGAAATTCCAACTTTTTCAATCTTTACACCTTCTGTTAGAAAAGAAA
CATGGCAGATATTCGAAAATGAAGCAAAAAACTTCTCTATTCACTTAAAAGACTTAAAACCAGAAATATACAAACAGCAT
ACTGAGCAATATATTAAAGAACATACTTTTGAATATTATGCTGAGTATCCTCTGTCTTTAATATTGGAAAAATTAGAAGC
TTATTTTCGAGAGTACAAAAATTGA

Upstream 100 bases:

>100_bases
AAAAATAACACATTTTATTTTAATTCATTTTTAATGTCTGGAATGGTTGCACACTTCATAAAATAGTTTGTAATTTAGCC
TTCAAATTGAACTGAAAAAA

Downstream 100 bases:

>100_bases
GAAAAGTATAAGCATCGGATGAATACTACTGAAAAACAAAAGCTGTCGGTTTTAATTATTACTTTTAATGAAGAGCGATA
CATAAAATCCCTGCTCGAAG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRILVIQQKRIGDVLTSTIICNNLKAKFPDSVIDYMCYPNSIDVLKENPNIDNIIPLSNEVRKSIPSLFKFIFQIRRKKY
DAVIDVYSKLETNLITLFSGAKYKVSYHKWYTKIFYNYTYERFDAVESEHGLAIENRLLLLKPFISEKITNVKPKIFLKD
SEINEAKQLLKSYNIDSEKPLIMFGILGSEVYKTYPLEGMAKIIDFTVAKTNATIIFNYVPYQKDLALEVYNYCSEETKK
HIVFDLYCTELRPFLALLSQCEMLIGNEGGAVNMAKALEIPTFSIFTPSVRKETWQIFENEAKNFSIHLKDLKPEIYKQH
TEQYIKEHTFEYYAEYPLSLILEKLEAYFREYKN

Sequences:

>Translated_354_residues
MRILVIQQKRIGDVLTSTIICNNLKAKFPDSVIDYMCYPNSIDVLKENPNIDNIIPLSNEVRKSIPSLFKFIFQIRRKKY
DAVIDVYSKLETNLITLFSGAKYKVSYHKWYTKIFYNYTYERFDAVESEHGLAIENRLLLLKPFISEKITNVKPKIFLKD
SEINEAKQLLKSYNIDSEKPLIMFGILGSEVYKTYPLEGMAKIIDFTVAKTNATIIFNYVPYQKDLALEVYNYCSEETKK
HIVFDLYCTELRPFLALLSQCEMLIGNEGGAVNMAKALEIPTFSIFTPSVRKETWQIFENEAKNFSIHLKDLKPEIYKQH
TEQYIKEHTFEYYAEYPLSLILEKLEAYFREYKN
>Mature_354_residues
MRILVIQQKRIGDVLTSTIICNNLKAKFPDSVIDYMCYPNSIDVLKENPNIDNIIPLSNEVRKSIPSLFKFIFQIRRKKY
DAVIDVYSKLETNLITLFSGAKYKVSYHKWYTKIFYNYTYERFDAVESEHGLAIENRLLLLKPFISEKITNVKPKIFLKD
SEINEAKQLLKSYNIDSEKPLIMFGILGSEVYKTYPLEGMAKIIDFTVAKTNATIIFNYVPYQKDLALEVYNYCSEETKK
HIVFDLYCTELRPFLALLSQCEMLIGNEGGAVNMAKALEIPTFSIFTPSVRKETWQIFENEAKNFSIHLKDLKPEIYKQH
TEQYIKEHTFEYYAEYPLSLILEKLEAYFREYKN

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=290, Percent_Identity=24.4827586206897, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41539; Mature: 41539

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILVIQQKRIGDVLTSTIICNNLKAKFPDSVIDYMCYPNSIDVLKENPNIDNIIPLSNE
CEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCEECCCHH
VRKSIPSLFKFIFQIRRKKYDAVIDVYSKLETNLITLFSGAKYKVSYHKWYTKIFYNYTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEHHHHHHHHHHHHHHH
ERFDAVESEHGLAIENRLLLLKPFISEKITNVKPKIFLKDSEINEAKQLLKSYNIDSEKP
HHHHHHCCCCCCEECCCEEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
LIMFGILGSEVYKTYPLEGMAKIIDFTVAKTNATIIFNYVPYQKDLALEVYNYCSEETKK
EEEEEECCCHHHHCCCHHHHHHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHC
HIVFDLYCTELRPFLALLSQCEMLIGNEGGAVNMAKALEIPTFSIFTPSVRKETWQIFEN
CEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCEEEEECCHHHHHHHHHHHC
EAKNFSIHLKDLKPEIYKQHTEQYIKEHTFEYYAEYPLSLILEKLEAYFREYKN
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRILVIQQKRIGDVLTSTIICNNLKAKFPDSVIDYMCYPNSIDVLKENPNIDNIIPLSNE
CEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCEECCCHH
VRKSIPSLFKFIFQIRRKKYDAVIDVYSKLETNLITLFSGAKYKVSYHKWYTKIFYNYTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEHHHHHHHHHHHHHHH
ERFDAVESEHGLAIENRLLLLKPFISEKITNVKPKIFLKDSEINEAKQLLKSYNIDSEKP
HHHHHHCCCCCCEECCCEEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCC
LIMFGILGSEVYKTYPLEGMAKIIDFTVAKTNATIIFNYVPYQKDLALEVYNYCSEETKK
EEEEEECCCHHHHCCCHHHHHHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHC
HIVFDLYCTELRPFLALLSQCEMLIGNEGGAVNMAKALEIPTFSIFTPSVRKETWQIFEN
CEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCEEEEECCHHHHHHHHHHHC
EAKNFSIHLKDLKPEIYKQHTEQYIKEHTFEYYAEYPLSLILEKLEAYFREYKN
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA