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The map label for this gene is ypmQ [H]

Identifier: 146300171

GI number: 146300171

Start: 2891053

End: 2891652

Strand: Reverse

Name: ypmQ [H]

Synonym: Fjoh_2416

Alternate gene names: 146300171

Gene position: 2891652-2891053 (Counterclockwise)

Preceding gene: 146300172

Following gene: 146300165

Centisome position: 47.43

GC content: 32.83

Gene sequence:

>600_bases
ATGAAAAAAATAATAATTGCTCTTTTTATCTTCTCATTTTCTTTGCAAAGCTGCAAAGAAGGTGATAAAAAAGATATTCC
CGCAGAAAAAAGTAAAGAAATCAGCGATTTGTCAATTTACAACCTGCCGTCAAAATGGACTACTCAGGACAATAAAGAGA
TAGAACTAAAAAGTCTTAAAGGAAATGTTTTGGTAATGGTTATGATTTATACAAGCTGTAAAGCTGCCTGCCCAAGATTA
GTTGCTGATATGCGAGATATTGAATCGAAACTCGACAAGAAAACAAAAAAGAATGTAAAACTGATTTTGGTAAGCATAGA
TCCAAAAACCGATACTCCAAAAAGACTGAAATCTTTTGCAATCGAAAATAAAATGAATCAGGAACCCTGGCTTTTCCTTC
GTTCATCTGAAGAAAATACACGAGAATTTGCTGCTGTTTTGGCTGTTAATTACAAACAAATATCTCCGGTAGATTTTTCG
CACTCAAATATTATAAGTGTATTTAATGAGGCTGGAGAATTAGTGTTTCAGCAGGAAGGTTTAGGCGTAAACAATGAAAA
AACAATTGAAGCAATAAATAGGGAAGCACAAAAAATATAA

Upstream 100 bases:

>100_bases
CTTTTAGAGGAAGTCTTAAGGCCCAATATTCAACCCGAAATCTTGGTTTTAGATGTGCATCCAGCACAAAACCAAAACTC
TAATTTTAATTTATTATGAA

Downstream 100 bases:

>100_bases
AGATTACACATTTTGATTTAGGAGGAAAACAAGAGGAGATTTTTTAGGAATGGATCGACTCTTGTTTTTTGTTTTTTTTA
ACTCTGTTCAGTTTTAAGCT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKKIIIALFIFSFSLQSCKEGDKKDIPAEKSKEISDLSIYNLPSKWTTQDNKEIELKSLKGNVLVMVMIYTSCKAACPRL
VADMRDIESKLDKKTKKNVKLILVSIDPKTDTPKRLKSFAIENKMNQEPWLFLRSSEENTREFAAVLAVNYKQISPVDFS
HSNIISVFNEAGELVFQQEGLGVNNEKTIEAINREAQKI

Sequences:

>Translated_199_residues
MKKIIIALFIFSFSLQSCKEGDKKDIPAEKSKEISDLSIYNLPSKWTTQDNKEIELKSLKGNVLVMVMIYTSCKAACPRL
VADMRDIESKLDKKTKKNVKLILVSIDPKTDTPKRLKSFAIENKMNQEPWLFLRSSEENTREFAAVLAVNYKQISPVDFS
HSNIISVFNEAGELVFQQEGLGVNNEKTIEAINREAQKI
>Mature_199_residues
MKKIIIALFIFSFSLQSCKEGDKKDIPAEKSKEISDLSIYNLPSKWTTQDNKEIELKSLKGNVLVMVMIYTSCKAACPRL
VADMRDIESKLDKKTKKNVKLILVSIDPKTDTPKRLKSFAIENKMNQEPWLFLRSSEENTREFAAVLAVNYKQISPVDFS
HSNIISVFNEAGELVFQQEGLGVNNEKTIEAINREAQKI

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22632; Mature: 22632

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIIALFIFSFSLQSCKEGDKKDIPAEKSKEISDLSIYNLPSKWTTQDNKEIELKSLK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECC
GNVLVMVMIYTSCKAACPRLVADMRDIESKLDKKTKKNVKLILVSIDPKTDTPKRLKSFA
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHH
IENKMNQEPWLFLRSSEENTREFAAVLAVNYKQISPVDFSHSNIISVFNEAGELVFQQEG
HHCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHEEEECCC
LGVNNEKTIEAINREAQKI
CCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKIIIALFIFSFSLQSCKEGDKKDIPAEKSKEISDLSIYNLPSKWTTQDNKEIELKSLK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECC
GNVLVMVMIYTSCKAACPRLVADMRDIESKLDKKTKKNVKLILVSIDPKTDTPKRLKSFA
CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHH
IENKMNQEPWLFLRSSEENTREFAAVLAVNYKQISPVDFSHSNIISVFNEAGELVFQQEG
HHCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHEEEECCC
LGVNNEKTIEAINREAQKI
CCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]