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The map label for this gene is sopB [H]

Identifier: 146284577

GI number: 146284577

Start: 80474

End: 81442

Strand: Direct

Name: sopB [H]

Synonym: Ent638_4251

Alternate gene names: 146284577

Gene position: 80474-81442 (Clockwise)

Preceding gene: 146284576

Following gene: 146284578

Centisome position: 51.01

GC content: 41.49

Gene sequence:

>969_bases
ATGAAACGTGCGCCAATTATTCCAAAGTCTTCCCCTGCAATCACTCCTGCTGCTACCACTGCAGCACCTGCTGCGCCAAT
GGTTGATTCATTGATTGCTCGAGTTGGTGCCATGGCAAAAGGAAATACGATCACCCTTCCCATTTGCGGTCGTGATGTAA
AATTTGTTCTTGAAACCATCCCGGGAAAATTGGTTGAAAAGGCAACGAAGGTTTGGGCTGGAAATGAGCGTCTTCAGGAT
TTGTTAAACGAGGATTCTTTGGATGACCTGATACCTTCATTCCTGTTAACGGGACAACAGCATCCTGCATTTGGTCGTAA
AATTATTGATGGTATTGAAATAGCGGATGGTAGCCGTCGACGTATGACCGCCATACTGACCTCTAGCGAATATCGAATTC
TTGTCGGTGATCTTGATGATGAGCAAATGGATTCGCTATGTAAGCTAGGTAATGATTATCGACCTACGAGTGCTTATGAA
AGAGGAAACCGTTACACGTTCCGTCTTAAGAATGAATTTAACGGGAATATTTCTGCTTTAGCGGATGCTGAAAATATTTC
TCGTAAAATCATCACTCGGTGCATCAATACAGCTAAACTTCCACGTGATTTGATAGCCCTCTTCTCTCATCCTGGTGAGT
TATCTGCACGAATGGGTGATAATTTGAATCGTCTTTTCAGTGATGATGAAGCCTTATTAATTTCCACAACTGATGAGCTT
TTAAAGAAGCGGCAAAGTGGGATTGTGTATGAAACAGAAGAAATTATTGAGGCATTAACTCGATCCCTTAAAGCTTCTAA
AGGCAGTGCATCTGTAGCGCCTGTTAAAAGAGAATTTGTTCCGGGCGCAATGGCTCAATACAAAGGTAATAAAGTAGTAT
TTACGCTTGATCGCACCAAAATCTCTAAAGATTGTATTGAGCAAATGGAGAATATACTTGAGAAATTAGAAAAACTTGGG
TCTCGTTAA

Upstream 100 bases:

>100_bases
GCTCATCTACAGGTGCATGGCGAAATGCGCTCGCGATTTGGGAGCCAGTTTGCAACGAAATATTTGATCGACTGATTAAA
CCTCGTTGGGAGATTCGTTA

Downstream 100 bases:

>100_bases
CTTCATATATTTTCTGATGTATCCTTCTCATTATCACTGATCCACGGTCCTAATCCTACATCTGGGACCGTGGTCCCAAC
CCTGCATCTGGGACCGTGGT

Product: plasmid-partitioning protein

Products: NA

Alternate protein names: Plasmid partition protein B [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKRAPIIPKSSPAITPAATTAAPAAPMVDSLIARVGAMAKGNTITLPICGRDVKFVLETIPGKLVEKATKVWAGNERLQD
LLNEDSLDDLIPSFLLTGQQHPAFGRKIIDGIEIADGSRRRMTAILTSSEYRILVGDLDDEQMDSLCKLGNDYRPTSAYE
RGNRYTFRLKNEFNGNISALADAENISRKIITRCINTAKLPRDLIALFSHPGELSARMGDNLNRLFSDDEALLISTTDEL
LKKRQSGIVYETEEIIEALTRSLKASKGSASVAPVKREFVPGAMAQYKGNKVVFTLDRTKISKDCIEQMENILEKLEKLG
SR

Sequences:

>Translated_322_residues
MKRAPIIPKSSPAITPAATTAAPAAPMVDSLIARVGAMAKGNTITLPICGRDVKFVLETIPGKLVEKATKVWAGNERLQD
LLNEDSLDDLIPSFLLTGQQHPAFGRKIIDGIEIADGSRRRMTAILTSSEYRILVGDLDDEQMDSLCKLGNDYRPTSAYE
RGNRYTFRLKNEFNGNISALADAENISRKIITRCINTAKLPRDLIALFSHPGELSARMGDNLNRLFSDDEALLISTTDEL
LKKRQSGIVYETEEIIEALTRSLKASKGSASVAPVKREFVPGAMAQYKGNKVVFTLDRTKISKDCIEQMENILEKLEKLG
SR
>Mature_322_residues
MKRAPIIPKSSPAITPAATTAAPAAPMVDSLIARVGAMAKGNTITLPICGRDVKFVLETIPGKLVEKATKVWAGNERLQD
LLNEDSLDDLIPSFLLTGQQHPAFGRKIIDGIEIADGSRRRMTAILTSSEYRILVGDLDDEQMDSLCKLGNDYRPTSAYE
RGNRYTFRLKNEFNGNISALADAENISRKIITRCINTAKLPRDLIALFSHPGELSARMGDNLNRLFSDDEALLISTTDEL
LKKRQSGIVYETEEIIEALTRSLKASKGSASVAPVKREFVPGAMAQYKGNKVVFTLDRTKISKDCIEQMENILEKLEKLG
SR

Specific function: Control of plasmid partitioning; required to recognize the cis-acting. Binds specifically with the DNA segment containing the sopC region. SopB is trans-acting [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 35483; Mature: 35483

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAPIIPKSSPAITPAATTAAPAAPMVDSLIARVGAMAKGNTITLPICGRDVKFVLETI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHC
PGKLVEKATKVWAGNERLQDLLNEDSLDDLIPSFLLTGQQHPAFGRKIIDGIEIADGSRR
CHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCC
RMTAILTSSEYRILVGDLDDEQMDSLCKLGNDYRPTSAYERGNRYTFRLKNEFNGNISAL
EEEEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEE
ADAENISRKIITRCINTAKLPRDLIALFSHPGELSARMGDNLNRLFSDDEALLISTTDEL
CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEEEEECHHHH
LKKRQSGIVYETEEIIEALTRSLKASKGSASVAPVKREFVPGAMAQYKGNKVVFTLDRTK
HHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCCEEEEEECHHH
ISKDCIEQMENILEKLEKLGSR
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRAPIIPKSSPAITPAATTAAPAAPMVDSLIARVGAMAKGNTITLPICGRDVKFVLETI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHC
PGKLVEKATKVWAGNERLQDLLNEDSLDDLIPSFLLTGQQHPAFGRKIIDGIEIADGSRR
CHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCC
RMTAILTSSEYRILVGDLDDEQMDSLCKLGNDYRPTSAYERGNRYTFRLKNEFNGNISAL
EEEEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEE
ADAENISRKIITRCINTAKLPRDLIALFSHPGELSARMGDNLNRLFSDDEALLISTTDEL
CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEEEEECHHHH
LKKRQSGIVYETEEIIEALTRSLKASKGSASVAPVKREFVPGAMAQYKGNKVVFTLDRTK
HHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCCEEEEEECHHH
ISKDCIEQMENILEKLEKLGSR
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]